PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g27750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HB-PHD
Protein Properties Length: 757aa    MW: 85492.7 Da    PI: 4.4132
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g27750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.62.8e-104595021053
                HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  +e L ++F++n  ps++ r  L+++l+L+ ++V+ WF+N R+
  Tp7g27750 459 AAVEKLRQVFAENELPSKAVRDCLSEELSLEPEKVSKWFKNARY 502
                56899*************************************97 PP
2PHD422.2e-14187242151
                SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
        PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  Tp7g27750 187 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 242
                6999***55455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.7E-14179244IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-12183242IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976185242IPR019787Zinc finger, PHD-finger
CDDcd155045.15E-32187239No hitNo description
SMARTSM002497.7E-10187240IPR001965Zinc finger, PHD-type
PfamPF006281.5E-11187242IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590188239IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.9E-11436501IPR009057Homeodomain-like
PROSITE profilePS5007112.147447507IPR001356Homeobox domain
SuperFamilySSF466897.7E-10449511IPR009057Homeodomain-like
SMARTSM003894.6E-9449511IPR001356Homeobox domain
CDDcd000864.51E-7450502No hitNo description
PfamPF000469.7E-8459502IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MEESETKERI ETEKACVSVE RIGSTSLSSL VKKEKETSNK RKYNKRKTEE EICSKSTNKK  60
YSRGWVRCEE DEEKGRKTRK RKSKRQQKGN KVEVDEALRL QRRTRYLLIK MKMQQNLIDA  120
YATEGWKGQS REKIRPDKEL ERARKQILNC KLGLRDAIHQ LDLLSSVGSI EEKVMAPDGS  180
IHHDHIFCAE CNSREAFPDN DIILCDGTCN RAFHQKCLDP PLETESIPPG DQGWFCKFCD  240
CKMEIIDTMN AQIGTQFPVD SNWQDIFNEE ASLPIGSEAT LNNEADWPSD DSGDGDYDPE  300
MKEKGGGSSS RSDSGGGGGD NDGESISTSL SLASDGVALS TGSWEGHGFG NMVESCETSN  360
EETVCGPRQR KTVDYTKLYH EMFGKDAVLQ EQGSEDEDWG PSDRRKRKKE SDAASTLVTM  420
FGNIKKYQDV EEIPEQSERD AVSVEGKVGR RPIFRLPRAA VEKLRQVFAE NELPSKAVRD  480
CLSEELSLEP EKVSKWFKNA RYMALRNRKV ESVKQPEDLK AFPRDSGSEA VMEKNTETNE  540
IQDTVDETAK EKNAETNDIQ DTVDETGKEK NTETNEIQDT KYEAAVEENT ETNEIQDTVY  600
ETVMEKNKET NEIQETVEET IMGENTETDE IQDTADKTST ETNEIQDTMD EIVLLRFNDP  660
TDQTTISPCN DDNQEEIQHA NDSFSTPTED ESQQYLEQRD SSFTLMPHEE LSNKLSLKNA  720
SGEQGDGEQD DGRGRIRSND GGPLQGRKQV TGCDAET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782TRKRKS
2404408RKRKK
3404409RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g27750
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHPRHA0.0L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412784.10.0pathogenesis-related homeodomain protein
RefseqXP_006412785.10.0pathogenesis-related homeodomain protein
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLV4MG340.0V4MG34_EUTSA; Uncharacterized protein
STRINGXP_006412784.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]