PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g29460
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 468aa    MW: 52686.2 Da    PI: 10.4771
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g29460genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-141697694
               ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3  6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
               ++s ++ +++ ++p  f+++h +gk+e +k +   d   r+Wevkl  ++++    +++GW++F  a+ L++ D+++F++dg++ f  +v
  Tp7g29460 16 VTSLAGHNSNPMIPDAFFATHlQGKNELTKLILTSDAFDRTWEVKL--KGRR----FAGGWEDFSAAHSLRDDDVLIFRHDGKMIF--HV 97
               55667778889**********977777777777777999*******..7776....99*********************9887766..44 PP
2B3581.7e-18140230698
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++ ++l+++r++l ++fa+++g+ k    ++ l+++sg+sW + l+++k  g+ ++++GW++F++ n+Lk+g f +Fkl++ +++++ +++++
  Tp7g29460 140 VTTSNLRLNRVSLTRPFAKTNGLHKSW-CEIDLMNQSGKSWVMGLRHNKITGQDFIRGGWRSFCHINELKTGSFYLFKLVR-NGTRPALQLCS 230
                57789999*************988754.59*****************99999999************************98.67778888876 PP
3B358.71e-18265361199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f++v+++++++ks++l+lp+ f++e+g+kk++  +++l d++g  W  ++  +  +g++++tk W +F+ a g+ +g+++++++++ +++++++k+++k
  Tp7g29460 265 FLTVTLKPYMFKSRQLRLPRYFVRENGIKKAR--EIILVDKNGGLWPSYVVSTTVKGGFYMTKSWTGFCGASGITTGETFTLEFVRGKGKSPMLKFCSK 361
                788999*********************99776..8***************99999999***************************99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-149101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-141099IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.09611103IPR003340B3 DNA binding domain
CDDcd100171.05E-111398No hitNo description
SMARTSM010191.9E-1714103IPR003340B3 DNA binding domain
PfamPF023623.4E-91693IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-19128229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16130230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.196135231IPR003340B3 DNA binding domain
SMARTSM010191.0E-20137232IPR003340B3 DNA binding domain
PfamPF023627.4E-17140230IPR003340B3 DNA binding domain
CDDcd100173.18E-15142230No hitNo description
Gene3DG3DSA:2.40.330.108.2E-15258361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-16264361IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-23265362IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421265361IPR003340B3 DNA binding domain
PfamPF023623.1E-18265361IPR003340B3 DNA binding domain
CDDcd100172.88E-11265352No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MADPPFYPKS DAPFFVTSLA GHNSNPMIPD AFFATHLQGK NELTKLILTS DAFDRTWEVK  60
LKGRRFAGGW EDFSAAHSLR DDDVLIFRHD GKMIFHVTPS GRSFSKILYD DSDWENISSN  120
NKSRLKAESS SSKNSCILAV TTSNLRLNRV SLTRPFAKTN GLHKSWCEID LMNQSGKSWV  180
MGLRHNKITG QDFIRGGWRS FCHINELKTG SFYLFKLVRN GTRPALQLCS DITPQGNCSK  240
ANGKAKVSAK SNREDESSSM NPSKFLTVTL KPYMFKSRQL RLPRYFVREN GIKKAREIIL  300
VDKNGGLWPS YVVSTTVKGG FYMTKSWTGF CGASGITTGE TFTLEFVRGK GKSPMLKFCS  360
KAKAKIVQAP FDGPRETGKE EEAQEETEIR LRKRARVSVD GEPSRRTQAS HKSSTTDPKI  420
LQCKQPLRTI ANQVKQITLD ILTDVRRFRS ELEIKEQNLK ALLGKIDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g29460
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666957.10.0B3 domain-containing protein REM3-like
SwissprotQ8VZQ90.0REM3_ARATH; B3 domain-containing protein REM3
TrEMBLA0A3P5Z5B70.0A0A3P5Z5B7_BRACM; Uncharacterized protein
STRINGBra011286.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]