PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g29470

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Protein Properties

Length: 436aa MW: 49452.1 Da PI: 9.2505

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g29470	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.6	8.2e-12	22	101	12	98
HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ ++p +f+++h + k +s++l+l++ s r Wev+l ++ + +++GW++F + ++ D++ F++dg++ f +v+ f Tp7g29470 22 QNSNPMIPDSFLSTHlK-GKIQSTKLKLTSdASDRAWEVEL--DGLR----FARGWNHFSLHHCVRNDDILSFRHDGDMVF--HVTPFG 101 455689*******62.4568999999987899***..6666....9**********************99999..777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.1E-14	8	103	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-13	9	103	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.377	11	103	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-8	15	103	IPR003340	B3 DNA binding domain
CDD	cd10017	5.16E-9	27	100	No hit	No description
SMART	SM01019	7.8E-6	225	319	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-8	230	318	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MVDPVMVSST NIPIFFVDLS GQNSNPMIPD SFLSTHLKGK IQSTKLKLTS DASDRAWEVE 60 LDGLRFARGW NHFSLHHCVR NDDILSFRHD GDMVFHVTPF GRSFSHQIHE LYRNKTSSKK 120 RARTETESSS ENSYLVAHVT PSNLRRNHMT SFCKVNGIKA ESFCRFKFVQ SGTNPVLQLC 180 PNTSRIHPQG DSSKANEKRN VPETESDEVE SEECSETALM NQNRSVALEL KPYMFKSGQL 240 FLHHSQENEI KKAGEITVVN KEGVEWKLHL VNIKGRGQFY IKGLKDCFIT NGIKKVGDCF 300 TLEVIRGGTS PILKICSKIK EASFDGYKTP NVRPPRIIQA SRAEEERETR VQKKARVSAE 360 GGSSHRTRAF NKSSVDPANL QHRQPLQPCS IFDQVKKVKQ SIVDTLTDIR RFRSEFEIKE 420 QNLEASLLEI DVLGMI

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MVDPVMVSST NIPIFFVDLS GQNSNPMIPD SFLSTHLKGK IQSTKLKLTS DASDRAWEVE  60
LDGLRFARGW NHFSLHHCVR NDDILSFRHD GDMVFHVTPF GRSFSHQIHE LYRNKTSSKK  120
RARTETESSS ENSYLVAHVT PSNLRRNHMT SFCKVNGIKA ESFCRFKFVQ SGTNPVLQLC  180
PNTSRIHPQG DSSKANEKRN VPETESDEVE SEECSETALM NQNRSVALEL KPYMFKSGQL  240
FLHHSQENEI KKAGEITVVN KEGVEWKLHL VNIKGRGQFY IKGLKDCFIT NGIKKVGDCF  300
TLEVIRGGTS PILKICSKIK EASFDGYKTP NVRPPRIIQA SRAEEERETR VQKKARVSAE  360
GGSSHRTRAF NKSSVDPANL QHRQPLQPCS IFDQVKKVKQ SIVDTLTDIR RFRSEFEIKE  420
QNLEASLLEI DVLGMI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g29470

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013669757.1	0.0	putative B3 domain-containing protein REM4 isoform X2
Swissprot	Q9SB79	0.0	REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBL	A0A3P6G227	0.0	A0A3P6G227_BRAOL; Uncharacterized protein
STRING	Bo1g011090.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9658	15	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31630.1	1e-172	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]