PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g29510
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 882aa    MW: 100681 Da    PI: 9.9061
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g29510genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.63.8e-127534094
               ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
               d s ++Wevk+  ++++    +t+GWk+Fv a +L+ gD+++Fk++g++ f  +v
  Tp7g29510  7 DASDKTWEVKI--DGRR----FTRGWKDFVTAYDLRIGDIIIFKHEGDMVF--NV 53
               5889*******..9998....9***********************999988..54 PP
2B369.16e-22118212398
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +++++++lk++ l lp + a+++ ++k+++ ++++ +++g+ W+v+l++  ++g+y++++GW++F+ +n+ k+gD ++F l+g+ ++++++ ++ 
  Tp7g29510 118 VAEVTASNLKLDTLDLPVEAASSNVLNKRCH-EMIVVNKEGKAWTVNLRFIESGGSYYIRGGWRRFCLDNRRKVGDLITFNLVGDGKATPMMCICP 212
                567899******************9999887.9999*************************************************9999***9996 PP
3B341.42.5e-13250347199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfr 98 
                f+ ++++s+++k + l+lp  f++++g++k  +k+++l+d++g +   +l     + gr  l+kGWk F++an++   g  +v++l++ +++ +v+k+++
  Tp7g29510 250 FVEITLTSYNMKYSKLILPVAFTNTNGINK--HKEIILMDKHGVKRLTNLVQdGPNYGRRGLGKGWKVFCEANDVLmIGQPFVLELIW-EDTVPVLKFCS 346
                677889********************9995..569********999999966745555567*************887***********.78889999998 PP

                S CS
         B3  99 k 99 
                k
  Tp7g29510 347 K 347
                5 PP
4B350.44e-163664371490
                T-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3  14 grlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                + l +p  f+++h  g   +e+k  +l++  s  +Wev++  ++++    lt+GWkeFv a++L+ gD+vvF+++g+  f
  Tp7g29510 366 KSLNIPVAFFSKHveG--RNEHKIAKLRSeASDTTWEVEI--DGRR----LTGGWKEFVTAHDLRIGDVVVFRHEGDLVF 437
                4599*********643..4577899***95666*******..9998....***********************8775444 PP
5B357.82e-18498587498
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + ++ ++l+ + l++p +f++++g++k+   +++l +e grsW++ l  +  +++++++ GW++F++ang++ g f +Fkl++ +++++v+++++
  Tp7g29510 498 ANVSLSSLRDDKLYIPVSFVRSNGLSKTYC-KIVLLNEMGRSWNLSL--NHDKSGTYIRHGWRRFCSANGINGGRF-TFKLVR-RSGTPVFRLYQ 587
                5567889999*************9998765.9***************..8888889****************9997.****98.66669998876 PP
6B371.51.1e-22604693697
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                +++++ +++ l+lp++f++++g+kk +  +++l++ +g +W++ l+++k+s+++vl++GW++F++ang+k++D + Fkl+g +++++v++++
  Tp7g29510 604 LTPSSIRNDTLYLPRRFVNSNGLKKGCC-EMILKNGNGGTWNLVLRHNKSSNATVLSGGWRSFCRANGIKARDPFRFKLVG-TTGKPVLRLC 693
                4778889999**************9886.**************************************************99.7888999887 PP
7B361.11.9e-19782878199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+  ++++++ ks+ ++lp +f++ +g++k++  ++t+  ++g +W v l+ ++++gr+ l++ Wk+F++ +g+k g+++v++l++++++++v+k++ k
  Tp7g29510 782 FVILTVTPYSVKSNKMRLPLRFTQVNGINKAG--KITMLGKDGVKWMVHLTNENRRGRMRLGRDWKGFCEVHGVKIGESFVLELIWEEGASPVLKFCTK 878
                566778999**************999999887..7***************999******************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.003159IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534159IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-13765IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-9756No hitNo description
Gene3DG3DSA:2.40.330.107.9E-16768IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-18115203IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-18116205IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.001116214IPR003340B3 DNA binding domain
CDDcd100171.80E-19116212No hitNo description
SMARTSM010194.1E-23117214IPR003340B3 DNA binding domain
PfamPF023621.1E-20118212IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-17242347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-15244347IPR015300DNA-binding pseudobarrel domain
CDDcd100174.87E-11249346No hitNo description
SMARTSM010194.0E-19250348IPR003340B3 DNA binding domain
PfamPF023628.7E-13250347IPR003340B3 DNA binding domain
PROSITE profilePS508638.995250347IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73353445IPR003340B3 DNA binding domain
SMARTSM010191.1E-17360445IPR003340B3 DNA binding domain
CDDcd100174.24E-13364439No hitNo description
Gene3DG3DSA:2.40.330.103.7E-18365447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-16365451IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-11366438IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-18489583IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-16489583IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.183495589IPR003340B3 DNA binding domain
CDDcd100172.20E-13495586No hitNo description
SMARTSM010191.7E-25496589IPR003340B3 DNA binding domain
PfamPF023628.9E-17498587IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-20597693IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-22598698IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-20599693No hitNo description
PROSITE profilePS5086314.508599698IPR003340B3 DNA binding domain
SMARTSM010191.8E-27600696IPR003340B3 DNA binding domain
PfamPF023629.8E-22603693IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-19774878IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-19778877IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-14781876No hitNo description
SMARTSM010194.7E-25782879IPR003340B3 DNA binding domain
PfamPF023621.1E-18782878IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042782878IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MAKLRSDASD KTWEVKIDGR RFTRGWKDFV TAYDLRIGDI IIFKHEGDMV FNVTPFGPSC  60
CEIQYAQSHI IKEEEVDNRD DDDDDNENQH MIRKVSRKKN LKPKTEPKSS LSFDYCFVAE  120
VTASNLKLDT LDLPVEAASS NVLNKRCHEM IVVNKEGKAW TVNLRFIESG GSYYIRGGWR  180
RFCLDNRRKV GDLITFNLVG DGKATPMMCI CPEEKCSELM SKYMSKERGT KKIKRRPKWI  240
ASSSSRRNRF VEITLTSYNM KYSKLILPVA FTNTNGINKH KEIILMDKHG VKRLTNLVQD  300
GPNYGRRGLG KGWKVFCEAN DVLMIGQPFV LELIWEDTVP VLKFCSKFSM MLNVKSKKVC  360
WTRFTKSLNI PVAFFSKHVE GRNEHKIAKL RSEASDTTWE VEIDGRRLTG GWKEFVTAHD  420
LRIGDVVVFR HEGDLVFHIT ALGPSCCEIE YTLAHKIDDD SDVRKDTIAS EIRPIKKRAK  480
KNPRREDYSS SGQSCFVANV SLSSLRDDKL YIPVSFVRSN GLSKTYCKIV LLNEMGRSWN  540
LSLNHDKSGT YIRHGWRRFC SANGINGGRF TFKLVRRSGT PVFRLYQAEY RHEVDVHSYF  600
VGSLTPSSIR NDTLYLPRRF VNSNGLKKGC CEMILKNGNG GTWNLVLRHN KSSNATVLSG  660
GWRSFCRANG IKARDPFRFK LVGTTGKPVL RLCLAESNRD TRQVDCSEGN HVNSLSTNPS  720
SREESSETNE SKEKSRDDIS VKEEDEEESI KDKKSSRECL NTEKWKYCSK LGASSSPSQN  780
RFVILTVTPY SVKSNKMRLP LRFTQVNGIN KAGKITMLGK DGVKWMVHLT NENRRGRMRL  840
GRDWKGFCEV HGVKIGESFV LELIWEEGAS PVLKFCTKVN CV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g29510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447536.10.0PREDICTED: B3 domain-containing protein REM17-like
RefseqXP_019089532.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A3P6BE350.0A0A3P6BE35_BRAOL; Uncharacterized protein
STRINGBra010225.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-130B3 family protein