PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g31020
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 392aa    MW: 44580.6 Da    PI: 6.7475
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g31020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.14.9e-16241061198
                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + ++rl +p kf + ++ k   sk +tl+++sg +++v l  +  +++   +  GW +Fvk++ L+e D +vFk++g sef   v +f+
  Tp7g31020  24 GFHNRLAIPQKFSTYCKRK--LSKIVTLKSPSGAKYNVGL--EEDDEKtLAFCCGWDKFVKDHSLQESDLLVFKFHGASEF--EVLIFD 106
                56799*******9666755..899****************..77776658889*********************9998999..888876 PP
2B361.71.2e-19282375195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvk 95 
                f+ ++++s+vl+++ l++p +  +++++   es++++ ++ +  +W +k++y  ++gr  +++GWk+Fvk+n+L++gD++vF+  ++  +  ++ v 
  Tp7g31020 282 FLVIMKRSHVLSKCFLTIPIQWSAKNMSL--ESQEVV-MQVDQTKWHLKFKYFESRGRGGISTGWKKFVKDNNLCQGDVCVFEPAKSevKPLHFDVY 375
                78899******************9**766..455677.5569999*******888888889**********************66541444444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-1913107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.6214108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-1916106IPR015300DNA-binding pseudobarrel domain
CDDcd100179.05E-1616106No hitNo description
SMARTSM010192.4E-1717108IPR003340B3 DNA binding domain
PfamPF023621.6E-1324106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-20281379IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-17282377IPR003340B3 DNA binding domain
CDDcd100171.96E-20282378No hitNo description
SMARTSM010198.3E-20282380IPR003340B3 DNA binding domain
PROSITE profilePS5086313.592282380IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-20282380IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MRWEEELYWT HFQTLHFSQL LLSGFHNRLA IPQKFSTYCK RKLSKIVTLK SPSGAKYNVG  60
LEEDDEKTLA FCCGWDKFVK DHSLQESDLL VFKFHGASEF EVLIFDGDTL CEKPTSYFVR  120
KCGHAEKTRA TDFTATSSRS PKKHINPDEV ETTLNQQPVI SPVGNELEDL IDIDIDIDID  180
KMLNQQLVVS QTGFEHEDHI NSDIDTESGQ LPVTSPTSTG PISEGKYPLN VFRKMRGEIS  240
NHNVDHKADV EMISAGSRKS ISETYKRKAL SLAKRVISPN GFLVIMKRSH VLSKCFLTIP  300
IQWSAKNMSL ESQEVVMQVD QTKWHLKFKY FESRGRGGIS TGWKKFVKDN NLCQGDVCVF  360
EPAKSEVKPL HFDVYIFRAA EAESSNNIVE SV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g31020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597186.10.0PREDICTED: B3 domain-containing protein REM16
SwissprotQ8RYD11e-161REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A3N6R8640.0A0A3N6R864_BRACR; Uncharacterized protein
STRINGBra037010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-163B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]