PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g33330

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WOX

Protein Properties

Length: 260aa MW: 29035.1 Da PI: 5.5722

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g33330	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.7	2.7e-20	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps++++++++++l ++ +++V++WFqNrRa+ k+ Tp7g33330 93 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELsqhgQIADQNVYNWFQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	104.4	7.5e-34	92	155	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i d+NV++WFQNr+aR+++kq Tp7g33330 92 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIADQNVYNWFQNRRARSKRKQ 155 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-16	89	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.414	89	154	IPR001356	Homeobox domain
SMART	SM00389	4.3E-13	91	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.31E-16	92	155	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-18	93	153	IPR001356	Homeobox domain
CDD	cd00086	4.37E-12	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MMEWDNQQQP NNHHSSNLQG IDVNGGSGSG GMYVKVMTDE QLETLRKQIA IYATICERLV 60 EMHKTLTSQQ DLAGGRLGGL YADPTIGHKM TARQRWTPTP VQLQILERIF DQGTGTPSKQ 120 KIKDITEELS QHGQIADQNV YNWFQNRRAR SKRKQHGVGS SNNNNGESEV ETETETLNEK 180 RKTPESLLVL PDGNNSNNAV GTTTTSPRPE DLCFQSPEMS SDLHLLGVLS NPRDEHLVGK 240 MGLSENYNLY DHVEDYGLSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g33330

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY048268	0.0	AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
GenBank	AY251404	0.0	AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds.
GenBank	BT000538	0.0	BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432267.1	1e-156	PREDICTED: WUSCHEL-related homeobox 13-like
Refseq	XP_013595483.1	1e-156	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-152	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A3P6FCY4	1e-156	A0A3P6FCY4_BRAOL; Uncharacterized protein
STRING	Bostr.7867s1413.1.p	1e-156	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-134	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]