PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g33380
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 252aa    MW: 27659.2 Da    PI: 5.5632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g33380genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023131149321
                ETTTTEEESSHHHHHHHHH CS
    zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                C++Cg+ F+++     H+r
  Tp7g33380 131 CNICGREFRSWKAVFGHMR 149
                ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.59E-5128155No hitNo description
PfamPF139123.0E-6130153IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSNPEKMKVD DTEEAKEDSD EQWSDKESAM REIVLALPTL HISREIFGVE EEEARLNEQA  60
VFAAELVVAA AEEAVMKDKS DGKKKKKKVT RPRKTMKIND EAGGSGKGGD VKKLKKKTSE  120
LTNIPRGPPI CNICGREFRS WKAVFGHMRC HKDRNYQGFL PPPKFSAVAG RVVIPGPNSA  180
FVPVVAGGRS SGGFVADAGG SAPENENGRG AVIDLNVNPV EEEDQKMNET ETIAKFDLNK  240
SPPKDEYEED KT
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g33380
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592252.11e-99PREDICTED: zinc finger protein ZAT9
RefseqXP_013649612.24e-99uncharacterized protein LOC106354258
TrEMBLA0A0D3A1Q63e-98A0A0D3A1Q6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ESB13e-98A0A3P6ESB1_BRAOL; Uncharacterized protein
STRINGBo1g006320.14e-99(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.12e-58C2H2 family protein