PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g34210
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 79aa    MW: 9150.03 Da    PI: 8.959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g34210genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
        Tp7g34210 11 SWTRKENKLFERALAIYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 55
                     6*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.289762IPR017884SANT domain
SMARTSM007172.2E-9860IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-141165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-61164IPR009057Homeodomain-like
PfamPF002496.9E-81155IPR001005SANT/Myb domain
CDDcd001671.44E-71258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSMSSNA SWTRKENKLF ERALAIYDQD TPDRWHNVAR AVGGKSAEEV RRHYELLIRD  60
VNDIESGRYP HPNYRSNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-30178177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g34210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895492e-93AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411987.12e-52protein RADIALIS-like 3
SwissprotQ6NNN02e-45RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A1J3D1Q81e-51A0A1J3D1Q8_NOCCA; Protein RADIALIS-like 3 (Fragment)
TrEMBLA0A1J3G2A21e-51A0A1J3G2A2_NOCCA; Protein RADIALIS-like 3 (Fragment)
TrEMBLA0A1J3GCM11e-51A0A1J3GCM1_NOCCA; Protein RADIALIS-like 3 (Fragment)
TrEMBLA0A1J3IEU71e-51A0A1J3IEU7_NOCCA; Protein RADIALIS-like 3 (Fragment)
STRINGXP_006411987.17e-52(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-33RAD-like 1