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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Tp7g34370 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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| Family | GRAS | ||||||||
| Protein Properties | Length: 432aa MW: 48377.5 Da PI: 4.5615 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 234.6 | 4.2e-72 | 121 | 420 | 2 | 307 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
+e L++++++v+s++l+ aq +L+rl+++ sp+g+p+qR+a+yf+eAL + l++s + + l +s+++ ++++ a k fse+sPi+ fsh+taNq
Tp7g34370 121 IEDLIRVVDCVESDELQFAQVILSRLNQRlTSPTGRPLQRAAFYFKEALGSLLSGSNRNPTRLL----SSWSEIVQKIRAIKEFSEISPIPLFSHFTANQ 216
678*************************99*************************444444333....344459************************** PP
GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
aI + ++++ vH++Df+i+ G+Q+++L++++a+++ lR+T+v +e + e++ ++e+L++fA+e++++f+++++++k++e l+++++r+
Tp7g34370 217 AIIDTLSSQsssLFVHVVDFEIGFGGQYASLMREIAEKSVTGGFLRVTVVLVEE--CAVETRLVKENLTQFAAEMEIRFQIEFVLMKTFEILSFKAIRFV 314
******999665679***********************************9966..9******************************************* PP
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
gE ++V ++ +r l s + ++++ ++++sPkv+v+v++e ++ s sF ++f++ale+y+++++sl++ +p+ + ++ vE ++l+++i
Tp7g34370 315 DGERTVVLISPVSFRRL-------SGIADFVNNLRRVSPKVIVFVDSEgwTEVtRSRSFRHEFVSALEFYTMVLESLDSAAPPGNLVKKIVETFVLRPKI 407
***********999999.......34557*******************665556788******************************************* PP
GRAS 295 vnvvacegaerre 307
+v ++ ++r++
Tp7g34370 408 YAAVETAADRRNA 420
*****99998764 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 34.938 | 94 | 432 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.5E-69 | 121 | 420 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 432 aa Download sequence Send to blast |
MKLQVSSPQD NQPSNTTNNN NTNSNQLSMD EHVMRSMDWD SIMKELELDD DSAPNPLKTG 60 FTATESAIAP LYTVDSNLSG FPDQIQPSDF ESFDVYPGQN QTNGYVFSSP DSVDNGGFDF 120 IEDLIRVVDC VESDELQFAQ VILSRLNQRL TSPTGRPLQR AAFYFKEALG SLLSGSNRNP 180 TRLLSSWSEI VQKIRAIKEF SEISPIPLFS HFTANQAIID TLSSQSSSLF VHVVDFEIGF 240 GGQYASLMRE IAEKSVTGGF LRVTVVLVEE CAVETRLVKE NLTQFAAEME IRFQIEFVLM 300 KTFEILSFKA IRFVDGERTV VLISPVSFRR LSGIADFVNN LRRVSPKVIV FVDSEGWTEV 360 TRSRSFRHEF VSALEFYTMV LESLDSAAPP GNLVKKIVET FVLRPKIYAA VETAADRRNA 420 GEADRRNASE MT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 1e-16 | 126 | 420 | 25 | 313 | Protein SCARECROW |
| 5b3h_A | 1e-16 | 126 | 420 | 24 | 312 | Protein SCARECROW |
| 5b3h_D | 1e-16 | 126 | 420 | 24 | 312 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Tp7g34370 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018470388.1 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
| Refseq | XP_018471096.1 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 0.0 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | V4ML23 | 0.0 | V4ML23_EUTSA; Uncharacterized protein | ||||
| STRING | Cagra.5996s0001.1.p | 0.0 | (Capsella grandiflora) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4291 | 28 | 57 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 0.0 | GRAS family protein | ||||
| Publications ? help Back to Top | |||
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