PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g34370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 432aa    MW: 48377.5 Da    PI: 4.5615
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g34370genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS234.64.2e-721214202307
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +e L++++++v+s++l+ aq +L+rl+++  sp+g+p+qR+a+yf+eAL + l++s  +  + l    +s+++ ++++ a k fse+sPi+ fsh+taNq
  Tp7g34370 121 IEDLIRVVDCVESDELQFAQVILSRLNQRlTSPTGRPLQRAAFYFKEALGSLLSGSNRNPTRLL----SSWSEIVQKIRAIKEFSEISPIPLFSHFTANQ 216
                678*************************99*************************444444333....344459************************** PP

       GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                aI + ++++     vH++Df+i+ G+Q+++L++++a+++     lR+T+v  +e   + e++ ++e+L++fA+e++++f+++++++k++e l+++++r+ 
  Tp7g34370 217 AIIDTLSSQsssLFVHVVDFEIGFGGQYASLMREIAEKSVTGGFLRVTVVLVEE--CAVETRLVKENLTQFAAEMEIRFQIEFVLMKTFEILSFKAIRFV 314
                ******999665679***********************************9966..9******************************************* PP

       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 gE ++V ++   +r l       s + ++++ ++++sPkv+v+v++e  ++   s sF ++f++ale+y+++++sl++ +p+ +  ++ vE ++l+++i
  Tp7g34370 315 DGERTVVLISPVSFRRL-------SGIADFVNNLRRVSPKVIVFVDSEgwTEVtRSRSFRHEFVSALEFYTMVLESLDSAAPPGNLVKKIVETFVLRPKI 407
                ***********999999.......34557*******************665556788******************************************* PP

       GRAS 295 vnvvacegaerre 307
                  +v ++ ++r++
  Tp7g34370 408 YAAVETAADRRNA 420
                *****99998764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.93894432IPR005202Transcription factor GRAS
PfamPF035141.5E-69121420IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MKLQVSSPQD NQPSNTTNNN NTNSNQLSMD EHVMRSMDWD SIMKELELDD DSAPNPLKTG  60
FTATESAIAP LYTVDSNLSG FPDQIQPSDF ESFDVYPGQN QTNGYVFSSP DSVDNGGFDF  120
IEDLIRVVDC VESDELQFAQ VILSRLNQRL TSPTGRPLQR AAFYFKEALG SLLSGSNRNP  180
TRLLSSWSEI VQKIRAIKEF SEISPIPLFS HFTANQAIID TLSSQSSSLF VHVVDFEIGF  240
GGQYASLMRE IAEKSVTGGF LRVTVVLVEE CAVETRLVKE NLTQFAAEME IRFQIEFVLM  300
KTFEILSFKA IRFVDGERTV VLISPVSFRR LSGIADFVNN LRRVSPKVIV FVDSEGWTEV  360
TRSRSFRHEF VSALEFYTMV LESLDSAAPP GNLVKKIVET FVLRPKIYAA VETAADRRNA  420
GEADRRNASE MT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1612642025313Protein SCARECROW
5b3h_A1e-1612642024312Protein SCARECROW
5b3h_D1e-1612642024312Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g34370
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470388.10.0PREDICTED: scarecrow-like protein 15
RefseqXP_018471096.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLV4ML230.0V4ML23_EUTSA; Uncharacterized protein
STRINGCagra.5996s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]