PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g34400
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HB-other
Protein Properties Length: 200aa    MW: 22829.3 Da    PI: 4.6278
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g34400genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.32.3e-075795442
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HH CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLter 42
               ++++t+eq++ Le  F  ++++  e++ +LA++lgL+ r
  Tp7g34400 57 KRKLTDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPR 95
               4589********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000862.76E-55695No hitNo description
SuperFamilySSF466897.7E-55795IPR009057Homeodomain-like
PfamPF000461.0E-45795IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-65795IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNHTVDDQNM AFISQLYPDL YTQIVPQQGE VKPPKRRRKK SKGAVAVGDG SNCLFRKRKL  60
TDEQVNMLEM SFGDEHKLES ERKDKLAAEL GLDPRWRKST TNSKNSHDNV VVDKCRLESE  120
VLQLKEQLYD AEREIQRLAE RVEGGSSNSP ISSSVSVEAN ETPFFGDYQV GDDGDDYDNL  180
FYPVPENSYI DGAEWMNLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13758RKKSKGAVAVGDGSNCLFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g34400
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895492e-86AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665374.11e-121homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-113ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A398ANQ71e-120A0A398ANQ7_BRACM; Uncharacterized protein
STRINGBo1g005450.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-87homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]