PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g35220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 252aa    MW: 27516.3 Da    PI: 8.2169
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g35220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.82e-292103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++ +++++++q+++e++
  Tp7g35220   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPEPNRPALFQSLLFEACGRTVNPVNGAVGMLGTGNWHVCQAAVETV 101
                6*********************9999777889****************************************************************9988 PP

     DUF260  96 ll 97 
                l+
  Tp7g35220 102 LR 103
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.1271107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPEPNR  60
PALFQSLLFE ACGRTVNPVN GAVGMLGTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLI  120
FSDESSEICT EIWRMQRSRN NEDSRNHHCR FSTSRSKLST TGMEESPVTR KRFKSDRSDS  180
VLGLQLNHGL ALTGSVVPVP LLPPPPFCKV VNGDRPGSPS EESVTTSCWE NGISGGDGYG  240
NKRERKLLNL FV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g35220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738741e-159AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721441e-159AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229761e-159AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411876.11e-139LOB domain-containing protein 39
SwissprotQ9SZE81e-131LBD39_ARATH; LOB domain-containing protein 39
TrEMBLV4MAC01e-138V4MAC0_EUTSA; Uncharacterized protein
STRINGXP_006411876.11e-139(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-126LOB domain-containing protein 39