PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g36450
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 229aa    MW: 26145.4 Da    PI: 10.3944
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g36450genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32148206159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  Tp7g36450 148 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCKVKKRVERLADDPRMVITTYEGRHLHS 206
                59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33133206IPR003657WRKY domain
SuperFamilySSF1182902.09E-28141207IPR003657WRKY domain
PROSITE profilePS5081129.344143208IPR003657WRKY domain
SMARTSM007747.5E-37148207IPR003657WRKY domain
PfamPF031062.0E-25149205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGTINQGISL FFFSFPNQTL SSSSSSSSSS PSSLVSPFLS HNSLNSLLHN NSSSFVTHPQ  60
YPINHMANLP ETLISISSLS SSKQRDDHDG IVNLDHPRLI GGISSQRPSL NPWAWRVVST  120
LKMKKLKTRR KVREPRFCFK TLSDVDVLDD GYRWRKYGQK VVKNTQHPRS YYRCTQDKCK  180
VKKRVERLAD DPRMVITTYE GRHLHSPSNH LDDESLSSSH HSPLSNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27139205874Probable WRKY transcription factor 4
2lex_A2e-27139205874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g36450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931581e-150KM593158.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288884.11e-108probable WRKY transcription factor 13
SwissprotQ9SVB72e-73WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A078IUU11e-107A0A078IUU1_BRANA; BnaA06g40630D protein
TrEMBLV5RF691e-107V5RF69_BRACM; WRKY transcription factor 13
STRINGBra033616.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-51WRKY DNA-binding protein 13