PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g36930
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family BBR-BPC
Protein Properties Length: 295aa    MW: 33178.5 Da    PI: 9.8117
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g36930genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3152.5e-9612951301
  GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 
                m++ g++e  r k+ +y+                ++++l   +++++ms++aerda+++ern a+++kk+a+a+rd+a+ qrdkal+er++a++er+++l
  Tp7g36930   1 MESGGQYEngRYKPdHYKgtqsvwnmmpqhqikeQHNALV--MNKKIMSILAERDAAVKERNEAVAAKKEALAARDEALEQRDKALSERDNAIIERESAL 98 
                7777887778888888888999999998777754446666..99******************************************************** PP

  GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
                 al+++en+l+  l  ++    g++s                  + e+++ +   +++ ++ea +++++k   r+k+ k+++++k kk +e+ +++v+++
  Tp7g36930  99 NALQYRENNLNYIL--SCAKRGGSQS----------------CLTVESHIPNPSTVSTIPHEAANTTRTK---RKKESKQETRSKGKKVGEDLNRQVASP 177
                ********965444..2222222222................2234455555666677666666666555...5667777788888888999******** PP

  GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                +  ++ +++++s d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS+++f++lL++La+eG++ls 
  Tp7g36930 178 G--KKCRKDWDSNDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGSVFSRLLSRLAGEGHELSS 275
                *..56*********************************************************************************************** PP

  GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                pvDLkd+WA+HGtn+++ti+
  Tp7g36930 276 PVDLKDYWARHGTNRYITIK 295
                *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.5E-1631295IPR010409GAGA-binding transcriptional activator
PfamPF062179.1E-9318295IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MESGGQYENG RYKPDHYKGT QSVWNMMPQH QIKEQHNALV MNKKIMSILA ERDAAVKERN  60
EAVAAKKEAL AARDEALEQR DKALSERDNA IIERESALNA LQYRENNLNY ILSCAKRGGS  120
QSCLTVESHI PNPSTVSTIP HEAANTTRTK RKKESKQETR SKGKKVGEDL NRQVASPGKK  180
CRKDWDSNDV GLNLVTFDET TMPVPMCTCT GTARQCYKWG NGGWQSSCCT TTLSQYPLPQ  240
MPNKRHSRMG GRKMSGSVFS RLLSRLAGEG HELSSPVDLK DYWARHGTNR YITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g36930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6336030.0EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411681.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005542.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005543.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005544.10.0protein BASIC PENTACYSTEINE5
SwissprotF4JUI30.0BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLV4M9X70.0V4M9X7_EUTSA; Uncharacterized protein
STRINGXP_006411681.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-176basic pentacysteine 5