PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g37570

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 785aa MW: 90100 Da PI: 6.5128

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g37570	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.1	1.1e-31	82	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p Tp7g37570 82 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVP 173 9*************************************999888555667889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-30	82	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-32	294	386	IPR018289	MULE transposase domain
Pfam	PF04434	9.6E-11	562	608	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.534	574	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-7	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MDNEVLDFDI GVGVSSGGDV DDDAIDIENH NAIDEDDMLD SPMPGLSVGN SDAGNYFPDG 60 DLLDLEPYDG LEFESEEAAK AFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF 120 RNMNEKRTKD REIKRPRTIT RVGCKASLSV KMQDSGKWVV SGFVKEHNHE LVPPDQVHCL 180 RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQKSI 240 EGEIQLLLDY LRQMNAGNPN FFYAVQGSED QSVGNVFWAD PKAIMDFTYF GDTVTFDTTY 300 RSNRYRLPFA PFTGVNHHGQ PILFGCAFII NETEASFVWL FRTWLAAMST HPPVSITTDH 360 DAVIRAAIMQ VFPGARHRFC KWHIFKKCQE KLSHVFLRHP SFESDFHKSV NLTESVEDFE 420 SCWFSLLDKY ELRDHEWLQA IYSDRRQWVP VYLRDTFFAE MSSTQRSDSM NSYFDGYINA 480 STNLSQFFKL YEKALESRLE KEVKADYDTM NSPPVLKTPS PMEKQASELY TRKLFMRFQE 540 ELVGTLTFMA SKADDDGDLV TYQVAKYGEA HKAHLVKFNI LEMRANCSCQ MFEFSGIVCR 600 HILAVLRVTN LLTLPPYYIL KRWTRNAKSS VIFDDYGLHA YANYLESHTV RYNTLRHKAF 660 NFVQEAGKSL YTCDVAVIAL QEAAKIVSLT MKNEVRRTMA NGHVKESSVT DGKRMCCNED 720 CQQEEEPEDE MDKKINQLRN ELELANRKCE AYRTNLLSVL KEMEDQKLQV SIKVQNIKIS 780 LKDNL

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MDNEVLDFDI GVGVSSGGDV DDDAIDIENH NAIDEDDMLD SPMPGLSVGN SDAGNYFPDG  60
DLLDLEPYDG LEFESEEAAK AFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF  120
RNMNEKRTKD REIKRPRTIT RVGCKASLSV KMQDSGKWVV SGFVKEHNHE LVPPDQVHCL  180
RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQKSI  240
EGEIQLLLDY LRQMNAGNPN FFYAVQGSED QSVGNVFWAD PKAIMDFTYF GDTVTFDTTY  300
RSNRYRLPFA PFTGVNHHGQ PILFGCAFII NETEASFVWL FRTWLAAMST HPPVSITTDH  360
DAVIRAAIMQ VFPGARHRFC KWHIFKKCQE KLSHVFLRHP SFESDFHKSV NLTESVEDFE  420
SCWFSLLDKY ELRDHEWLQA IYSDRRQWVP VYLRDTFFAE MSSTQRSDSM NSYFDGYINA  480
STNLSQFFKL YEKALESRLE KEVKADYDTM NSPPVLKTPS PMEKQASELY TRKLFMRFQE  540
ELVGTLTFMA SKADDDGDLV TYQVAKYGEA HKAHLVKFNI LEMRANCSCQ MFEFSGIVCR  600
HILAVLRVTN LLTLPPYYIL KRWTRNAKSS VIFDDYGLHA YANYLESHTV RYNTLRHKAF  660
NFVQEAGKSL YTCDVAVIAL QEAAKIVSLT MKNEVRRTMA NGHVKESSVT DGKRMCCNED  720
CQQEEEPEDE MDKKINQLRN ELELANRKCE AYRTNLLSVL KEMEDQKLQV SIKVQNIKIS  780
LKDNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g37570

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411599.2	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4MD13	0.0	V4MD13_EUTSA; Uncharacterized protein
STRING	XP_006411599.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]