PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0006_014
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 239aa    MW: 27508.5 Da    PI: 7.2367
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0006_014genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57392.25.7e-2954148298
         DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                    +fqrlwseeD++v+L G+++fk ktgk   +d+++fye vk+si f+ ++   l++Kir LK+ + +k+k+   g  ps++k+ d+k+fels  +W
  Tp_un0006_014  54 YFQRLWSEEDDLVILNGMLKFKIKTGKTHNEDMHGFYELVKNSITFEGKSlYRLTNKIRTLKQTYMTKKKN---GVTPSVTKTYDHKCFELSDLVW 146
                    89********************************************9765279*************99999...********************** PP

         DUF573  97 gs 98 
                    gs
  Tp_un0006_014 147 GS 148
                    95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-2155147IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTKKHDQLLQ DPQTASLSEE ETSEATTSVS TAKQAKKNDE KEIVGTETTT KKSYFQRLWS  60
EEDDLVILNG MLKFKIKTGK THNEDMHGFY ELVKNSITFE GKSLYRLTNK IRTLKQTYMT  120
KKKNGVTPSV TKTYDHKCFE LSDLVWGSEV ESKMKKIKLE SPEPEGGMVD ETDWSINSFL  180
LGHIASFGID EEHVKQKWSL LPVEMKTKLR NKWKMLEGQA VEVVVQKIEF VHEVIPLFV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.13e-41DNA-binding storekeeper protein-related transcriptional regulator