PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0010_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TALE
Protein Properties Length: 587aa    MW: 66553.3 Da    PI: 7.1532
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0010_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.4e-093914281954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Tp_un0010_001 391 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 428
                    554459******************************88 PP
2BELL103.21.8e-33249320172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    e++elqk+kakLl +lee+++rY +y+eq++  +++Fea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi
  Tp_un0010_001 249 EFMELQKRKAKLLAMLEELKRRYGHYREQMRLAAGAFEAAVGIGAAEMYTALASRAMSRHFRCLKDGLVGQI 320
                    679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075263.3E-41177316IPR006563POX domain
SMARTSM005749.7E-65183318IPR006563POX domain
PROSITE profilePS5007112.017369432IPR001356Homeobox domain
CDDcd000861.59E-10372433No hitNo description
SMARTSM003895.6E-9372436IPR001356Homeobox domain
SuperFamilySSF466892.99E-17373439IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-28375439IPR009057Homeodomain-like
PfamPF059207.7E-18389428IPR008422Homeobox KN domain
CDDcd001020.00354465540No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MINQIPGFDG TNQNPNVHHH QQQHHYNHQI FGSNSNMGMM IDFSKQHEIR MTSGMDHHHH  60
HHHQTSGGTD QNQLLEDSSS SMRLCNVNNN FSSEVNDERP PQRPSQGLSL SLSSSNPTSI  120
SLQSFDLRPQ QQQLQGYSGK STHHQNLPHS QMMLMMMNSQ QQNNTSNLHH HHHQFQIGSS  180
KFLSPAQELL SDFCSLGVKE SDDEVMMMKH KRKQKGKQQE EWDTSNNDQQ DQSATTSSKK  240
HVPPLHSLEF MELQKRKAKL LAMLEELKRR YGHYREQMRL AAGAFEAAVG IGAAEMYTAL  300
ASRAMSRHFR CLKDGLVGQI QATSQALGER DDDNRGVSIA ARGETPRLRL LDQALRQQKS  360
YRQMSLVEAH PWRPQRGLPE RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN  420
WFINARVRLW KPMIEEMYCE ETRGEEQQME ITNPMFIDTK PDPNQIMRVE PESLSAIVTK  480
TGHKDNSNQQ GTVSFGSTFD FSSYGGNQAV TYTGEGGTRD VSLTLGLQNG GVSLALSPVT  540
AQVGPLYYGR DHIEGSVQYQ PSMLDDDQAQ NLPYRNLMGA QLLHDMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15378436563Homeobox protein Meis2
3k2a_B3e-15378436563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528660.0AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637027.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A3P6CG880.0A0A3P6CG88_BRAOL; Uncharacterized protein
STRINGBo4g142080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]