PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0030_011
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 77aa    MW: 8952.83 Da    PI: 9.5276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0030_011genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.3e-101054345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+  d+++  a + + ++   +W  +ar +g g++++++k ++ 
    Tp_un0030_011 10 SWTAKQDKQFEMALATYDKDtpdRWQNVARAVG-GKSAEEVKRHYE 54
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.785661IPR017884SANT domain
SMARTSM007175.2E-9759IPR001005SANT/Myb domain
SuperFamilySSF466893.14E-13965IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-51063IPR009057Homeodomain-like
PfamPF002496.7E-81054IPR001005SANT/Myb domain
CDDcd001675.12E-71157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MSTSRSSNSS WTAKQDKQFE MALATYDKDT PDRWQNVARA VGGKSAEEVK RHYELLIRDV  60
NDIESGRYPQ PRYRNTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30177177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298896.17e-52protein RADIALIS-like 4
SwissprotQ1G3C48e-39RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLR0HPU61e-50R0HPU6_9BRAS; Uncharacterized protein
STRINGCagra.14142s0003.1.p3e-51(Capsella grandiflora)
STRINGXP_006298896.13e-51(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.11e-40RAD-like 4