PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0031_011
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 630aa    MW: 68953.4 Da    PI: 5.2287
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0031_011genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3021.4e-922576292374
           GRAS   2 velLlecAeavss..gdle......laqalLarlsel.aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                    +e+L+++Ae + +  + ++      laq +Larl+++ +s++ +   p+qR+a++++eAL + +++         +p   +++n + ++aa++ fs
  Tp_un0031_011 257 IEQLFNAAELIGTtgN-NNngdhtvLAQGILARLNHHlNSSYNNnkaPFQRAASHIAEALLSLIHD--------ASPPLITPENLILRIAAYRSFS 343
                    5678888888765431.222444469**********97444443355******************9........4444555678************ PP

           GRAS  86 evsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLas.....RpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                    e+sP+l+f ++taNq Ile+ + e   +r+HiiDfd+++G+QW +L+q+L+s     R++ + sl+iT++++p s+  ++ el+ t+e+L++fA e
  Tp_un0031_011 344 ETSPFLQFVNFTANQSILESCNDElgfDRIHIIDFDVGYGGQWSSLMQELSSggggrRRNRASSLKITVFAPPPSTvsDEFELRFTEENLRSFAGE 439
                    **********************99999***********************9744443557899*********9988899***************** PP

           GRAS 172 lgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                    +++pfe ++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y++
  Tp_un0031_011 440 VKIPFEMELLSLELLLNPAYWPLSLRSseKEAIAVNLPINSVVSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHT 527
                    *********988888888999998887779********9655554........5677*************************************** PP

           GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                    +l++sl+a+   +s+++++vEr++++++i++++++++++     e+   Wr+ ++++GF+p++ls++a++qa++ll++ +++g++ve+++ slv++
  Tp_un0031_011 528 TLLESLDAN---QSQDDSSVERFWVQPAIEKLLTKRHRW----IERSPPWRSLITQCGFSPASLSQTAEAQAECLLQRNPVRGFHVEKRQCSLVMC 616
                    *********...8**************************....89999************************************************ PP

           GRAS 362 WkdrpLvsvSaWr 374
                    W++++Lv+vSaW+
  Tp_un0031_011 617 WQRKELVTVSAWK 629
                    ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.076231609IPR005202Transcription factor GRAS
PfamPF035145.0E-90257629IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGVSSFY SDPQKIWFNQ EKIGIRREED LGYVVGGGLP EPTSVLDALR  60
SPSPLASHSS TTTTTLSSSH GGGAVTATAT AGDDKCSQLG LDDLDGVLSA SSPGQEQSIL  120
RLIMDPGSGF GVFDPGFGFG SGSVPATENP NNLLSCSFPF QEIANPEALI NPNQNPCLFS  180
NPPSSPPAKR FNSGSHQAFP FSDPDPGHDP FLVRRQQQFQ FPFQFHQQQI PSSSSSAAAL  240
VPVPPPGMAG DDQSVIIEQL FNAAELIGTT GNNNNGDHTV LAQGILARLN HHLNSSYNNN  300
KAPFQRAASH IAEALLSLIH DASPPLITPE NLILRIAAYR SFSETSPFLQ FVNFTANQSI  360
LESCNDELGF DRIHIIDFDV GYGGQWSSLM QELSSGGGGR RRNRASSLKI TVFAPPPSTV  420
SDEFELRFTE ENLRSFAGEV KIPFEMELLS LELLLNPAYW PLSLRSSEKE AIAVNLPINS  480
VVSGYLPLIL RFLKQISPNV VVCSDRGCDR NDAPFPNAVI HALQYHTTLL ESLDANQSQD  540
DSSVERFWVQ PAIEKLLTKR HRWIERSPPW RSLITQCGFS PASLSQTAEA QAECLLQRNP  600
VRGFHVEKRQ CSLVMCWQRK ELVTVSAWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2730362939375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0205910.0BT020591.1 Arabidopsis thaliana At2g45160 gene, complete cds.
GenBankBT0537600.0BT053760.1 Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397697.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A1J3J2Q10.0A0A1J3J2Q1_NOCCA; Scarecrow-like protein 27
STRINGXP_006397697.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]