PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp_un0053_001

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 256aa MW: 29140.7 Da PI: 6.3187

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp_un0053_001	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	103.9	1.3e-32	45	140	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++r+w+eeDe+++L Gl+d++a++g +p +d+d+fy+f+ +si k+sk+ql++Kir+LK Kf +++k++ g++p f+ +d ++f ls++iWg+ Tp_un0053_001 45 SNRIWNEEDELTVLNGLVDYQAQRGLEPNNDWDDFYRFLGDSIVEKFSKDQLLSKIRKLKGKFLVRMEKISPGNDPIFAGINDAEAFRLSRRIWGQ 140 68********************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.6E-26	46	139	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MVDPRQIDFS EGTTPSPPSL SRRKSPRKHA SKSSHKKKKL ASAVSNRIWN EEDELTVLNG 60 LVDYQAQRGL EPNNDWDDFY RFLGDSIVEK FSKDQLLSKI RKLKGKFLVR MEKISPGNDP 120 IFAGINDAEA FRLSRRIWGQ NDSESANQNK TGEETCKENE QMCNHVPLNE NVVAEAGFEG 180 NDTDESCALR DAFETVMSRG LTDYQKKSQL EKLMNLGKAK RKELSDEWKA LCAEELKLNA 240 KRFRFSAMLA EATDDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	38	RRKSPRKHASKSSHKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00061	PBM	Transfer from AT4G00270	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405926.1	2e-89	GLABROUS1 enhancer-binding protein
Refseq	XP_006405927.1	2e-89	GLABROUS1 enhancer-binding protein
Swissprot	Q9ASZ1	6e-76	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	A0A3N6RAV9	2e-89	A0A3N6RAV9_BRACR; Uncharacterized protein
STRING	XP_006405926.1	7e-89	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	8e-73	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]