PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp_un0053_003

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 268aa MW: 31606.6 Da PI: 8.5729

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp_un0053_003	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	77.3	2.6e-24	56	148	5	97
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 w+++ +++L G++++++++g + +d+d fy ++k+ i+ ++sk+ql++Ki+ LKk++kk ++ + ke sf+++ d +++ ls++iW+ Tp_un0053_003 56 LTWTKSNVLLILNGIVEYENEKGFRYNSDWDMFYGYMKDVINTRFSKKQLMKKIKTLKKRYKKFFERFNGWKELSFTNSFDGEVLRLSMIIWD 148 46******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-18	57	148	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MVDPKDSVSY CFEGQQNNKS LSSSPLKRKH EDDDNDNNFS YTETRVRRRK QKKTTLTWTK 60 SNVLLILNGI VEYENEKGFR YNSDWDMFYG YMKDVINTRF SKKQLMKKIK TLKKRYKKFF 120 ERFNGWKELS FTNSFDGEVL RLSMIIWDEN VTEDASNENR QDQEQVLVLN KDVPCVEQKQ 180 ESYTRMDKDE SEEGDADEFY VLQDALEAAK SSQSLGKTLH KMSLQNLKTL GAQRRKELTD 240 EWKTLLNEEM QLNIKKLTLF SKLSNAGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443703.1	1e-100	PREDICTED: GLABROUS1 enhancer-binding protein-like 3
TrEMBL	A0A3P6EZD7	3e-97	A0A3P6EZD7_BRAOL; Uncharacterized protein
STRING	Bo7g043690.1	8e-98	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	2e-20	DNA-binding storekeeper protein-related transcriptional regulator