PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0193_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 296aa    MW: 34424.6 Da    PI: 8.2955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0193_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-1672117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
    Tp_un0193_001  72 RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 117
                      899*****************************.***********996 PP
2Myb_DNA-binding58.61.4e-18125167246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++T eE+e+l +a+k++G++ W+ Iar ++ gRt++++k++w+ 
    Tp_un0193_001 125 RAFTDEEEERLMQAHKLYGNK-WAMIARLFP-GRTDNSVKNHWHV 167
                      689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.0767118IPR017930Myb domain
SuperFamilySSF466895.24E-2969165IPR009057Homeodomain-like
SMARTSM007175.0E-1471120IPR001005SANT/Myb domain
PfamPF002495.1E-1672117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2773125IPR009057Homeodomain-like
CDDcd001672.01E-1275116No hitNo description
PROSITE profilePS5129426.79119173IPR017930Myb domain
SMARTSM007176.3E-15123171IPR001005SANT/Myb domain
PfamPF002494.0E-15125166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-22126172IPR009057Homeodomain-like
CDDcd001672.13E-11126166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSEDHRLWMD QIASWDYFSL NINNDQRHGH YYASHSQEEI KNPNQSNYSN CSKKETGDCG  60
SCGHSSKVSV SRGHWRPAED AKLKELVAVY GPQNWNLIAE KLQGRSGKSC RLRWFNQLDP  120
RINKRAFTDE EEERLMQAHK LYGNKWAMIA RLFPGRTDNS VKNHWHVIMA RKFREQSSVY  180
RRRKTMIPLK PFVNPNPHSC NDFDPTRSDL IHLVSNDQNH LMLPIPCFSG YDHGNNSPLM  240
LGMFENQMVV DDYSARTREA TTFDFSNQTG KCEMLDESMN EKKKPHFFDF LGLGTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-33701735108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013694796.20.0transcription factor MYB105-like
SwissprotQ9SEZ41e-166MY105_ARATH; Transcription factor MYB105
TrEMBLA0A3N6QQZ00.0A0A3N6QQZ0_BRACR; Uncharacterized protein
STRINGBo6g095400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-169myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]