PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0339_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 174aa    MW: 17960.5 Da    PI: 4.8609
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0339_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof604.6e-191332961
         zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                   PryfCk+CrryWt+GG+lr+vPvGgg+r++ ++
  Tp_un0339_001  1 PRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSSK 33
                   9***************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.8E-15132IPR003851Zinc finger, Dof-type
ProDomPD0074788.0E-11127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088417.234132IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
PRYFCKSCRR YWTQGGTLRD VPVGGGTRRS SSKRNRSFSS NATTATSSSC SSSVITTTHG  60
SEPTNQENVT NEAKGSNVIS GYGSFASLLS GQSDGGGAFL ALGNGSGGSD YGFGFGYGYG  120
LEEMGIGYLG VGSGGDIPVV DGGDTWQFGE VEGKSGDSLI WPGLEISMQS NDVK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0889461e-41AY088946.1 Arabidopsis thaliana clone 103581 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590549.12e-74PREDICTED: dof zinc finger protein DOF1.6
SwissprotQ9SX973e-46DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A0D3CNY46e-73A0A0D3CNY4_BRAOL; Uncharacterized protein
STRINGBo6g010470.11e-73(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.13e-38Dof family protein