PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp_un0429_001

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 186aa MW: 21521.6 Da PI: 8.9291

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp_un0429_001	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.2	2.1e-06	88	121	1	37
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 r+r h + Er RR++ ++++ L +llP a ++ K Tp_un0429_001 88 RCRRHMMKERTRREKQKQSYLALHSLLPFA---TKAK 121 6788*************************9...4444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.41E-6	82	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.40E-5	85	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MDYFFLDSIC QEEEDKFWDL IAGDVSGNGD GDKTVSVPNR SAFRSYVKDT ELRMLSSSST 60 VNMKRRLVNL LRKNWEEKKN AAAPEKDRCR RHMMKERTRR EKQKQSYLAL HSLLPFATKA 120 KLAEDHDEMS GTKVRFNLQE PLCGIDSMVE ILQCLKSMGT KLKTVQANFS RHEFSATMNI 180 ESQFII

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189402	1e-106	AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
GenBank	AC189591	1e-106	AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403210.1	1e-101	transcription factor bHLH92
Swissprot	Q9FIX5	8e-85	BH092_ARATH; Transcription factor bHLH92
TrEMBL	A0A1J3EDG9	1e-100	A0A1J3EDG9_NOCCA; Transcription factor bHLH92 (Fragment)
STRING	XP_006403210.1	1e-101	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	3e-87	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]