PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp_un0487_001

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB_related

Protein Properties

Length: 113aa MW: 12613.2 Da PI: 10.632

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp_un0487_001	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	7e-10	1	37	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky Tp_un0487_001 1 RFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 37 79999*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.769	1	42	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.6E-11	1	41	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.35E-10	1	41	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-7	1	37	IPR001005	SANT/Myb domain
CDD	cd00167	6.33E-7	2	38	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-7	2	37	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
RFLMGLKKYG KGDWRNIARN FVTTRTPTQV ASHAQKYFIR QLTDCKDKRR SSIHDITTVN 60 VPDANAPTTA TPAAATVSPI PTNSFDVFAP PKPHHSFAFA PASSYYNAFP QWS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398645.1	9e-65	transcription factor DIVARICATA
Swissprot	Q8S9H7	5e-34	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	V4LJX8	2e-63	V4LJX8_EUTSA; Uncharacterized protein
STRING	XP_006398645.1	3e-64	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20477	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01200.1	2e-45	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]