PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp_un0727_001

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 156aa MW: 17892.2 Da PI: 9.356

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp_un0727_001	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.3e-18	9	64	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t++q+++Le++F n+++ + + +L++ lgL++rqV vWFqN+Ra+ k Tp_un0727_001 9 RNKKKRLTQSQVRQLEKCFTLNKKLEPDLKLHLSNTLGLPQRQVAVWFQNKRARSK 64 567889************************************************99 PP
2	HD-ZIP_I/II	98.9	4.7e-32	10	102	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++ qv++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE ++ Lk++++a +++++Le++v+ L++elk+ Tp_un0727_001 10 NKKKRLTQSQVRQLEKCFTLNKKLEPDLKLHLSNTLGLPQRQVAVWFQNKRARSKTQSLELQHCNLKSKLEAALSDKAKLEHQVQLLQDELKR 102 59***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.64E-17	4	67	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	6	66	IPR001356	Homeobox domain
SMART	SM00389	2.5E-16	8	70	IPR001356	Homeobox domain
CDD	cd00086	1.62E-13	9	67	No hit	No description
Pfam	PF00046	2.2E-15	9	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.2E-17	12	69	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MENTQSQSRN KKKRLTQSQV RQLEKCFTLN KKLEPDLKLH LSNTLGLPQR QVAVWFQNKR 60 ARSKTQSLEL QHCNLKSKLE AALSDKAKLE HQVQLLQDEL KRSRNQLALF TNQDSPVDNS 120 NLGSCEEGHD DQVVVFDDLY ACFVRNGHGS TSTSWV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879304.1	1e-100	homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	9e-99	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	D7MTN0	3e-99	D7MTN0_ARALL; ATHB52
STRING	fgenesh2_kg.8__1293__AT5G53980.1	1e-100	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-101	homeobox protein 52