PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un1580_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 234aa    MW: 25505.9 Da    PI: 6.9171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un1580_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.00014210230929
                    HHHHHHHHHHHHHHHHCTSCC CS
            HLH   9 ErrRRdriNsafeeLrellPk 29 
                     ++RR+ri +++  L+el+P+
  Tp_un1580_001 210 AKNRRERISERLKVLQELVPN 230
                    69******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.3E-4201231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.512201234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-4203230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALVNDHLSK PNSSEDLSSP ENYGLDHTEL AYAGGEGGGS ASSSSTMNSD HHQQNHQGFV  60
FYPSQETIED HNSSMDFNTL SFLSFDHQRN FIPPASVLEG NMSYGYTGWS HNQFDSISPR  120
VIKTPSCFET TSSFGLTKPE TNHANGDWLY SDSTIVNAGS RHESASPKSA GHKRPFTGEN  180
TQALKKCTGA NGKAKPKATT SPKDPQSLAA KNRRERISER LKVLQELVPN GTKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp_un1580_001
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405832.11e-122putative transcription factor bHLH086
SwissprotQ9FJ001e-110BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A1J3DLI01e-122A0A1J3DLI0_NOCCA; Uncharacterized protein
STRINGXP_006405832.11e-122(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-110RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  3. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]