PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_002FAE6E8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 48aa    MW: 5602.22 Da    PI: 6.9388
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_002FAE6E8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-18447146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           rg ++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++
  Traes_1AL_002FAE6E8.1  4 RGCFSQQEEDHIVALHHILGNR-WSQIASHLP-GRTDNEIKNFWNS 47
                           899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.577148IPR017930Myb domain
SuperFamilySSF466896.24E-14147IPR009057Homeodomain-like
SMARTSM007175.2E-8348IPR001005SANT/Myb domain
PfamPF002497.4E-16447IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-20647IPR009057Homeodomain-like
CDDcd001673.72E-10746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 48 aa     Download sequence    Send to blast
DLKRGCFSQQ EEDHIVALHH ILGNRWSQIA SHLPGRTDNE IKNFWNSC
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643788e-70AK364378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2024H18.
GenBankX708788e-70X70878.1 H.vulgare myb3 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186841.15e-29myb-related protein Hv33-like isoform X3
SwissprotP200275e-28MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A3B5Y5711e-28A0A3B5Y571_WHEAT; Uncharacterized protein
TrEMBLM7ZL779e-29M7ZL77_TRIUA; Myb-related protein Hv33
STRINGTRIUR3_08099-P11e-29(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.34e-23myb domain protein 55