PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_0B583488F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 251aa    MW: 27776.7 Da    PI: 9.6717
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_0B583488F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.53.3e-282980358
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                           ++rY+eCl+NhAa+ GghavDGCgEfmps    +  + l+CaACgCHR+FHRr+  
  Traes_1AL_0B583488F.1 29 EARYRECLRNHAAAQGGHAVDGCGEFMPS----SAHDLLRCAACGCHRSFHRRDDG 80
                           689*************************9....5678****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.7E-243078IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-173078IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-243178IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0483278IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.65E-18163236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27164235IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-23175231IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEFTGPEHAA GTPPGTRSPS DASSGNSGEA RYRECLRNHA AAQGGHAVDG CGEFMPSSAH  60
DLLRCAACGC HRSFHRRDDG QQQQHPRLFL PAPGATSTTP TPRVPLLMPP PQQHHHPYAA  120
GHPQAPPFAY NPHHQHYQRT PSGGGTTTES SSEEPDPGPP STSAPGQGHG QAQRRKRFRT  180
RFTAEQREQM LALAERVGWR MLKQDEALVE QLCAQAGVRR QVFKVWMHNN KHHRRQPESQ  240
QQQQKQGRGM N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-231762321874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969682e-56FP096968.1 Phyllostachys edulis cDNA clone: bphyst021i04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154848.11e-142zinc-finger homeodomain protein 6-like
SwissprotB8AX537e-72ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A446JDX30.0A0A446JDX3_TRITD; Uncharacterized protein
STRINGTraes_1AL_0B583488F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-25homeobox protein 22
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]