PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AL_1360F98E7.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 142aa MW: 15370.1 Da PI: 9.7488

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_1360F98E7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4.1e-07	3	34	16	47
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47 k++G g+W+ I+r + Rt+ q+ s+ qky Traes_1AL_1360F98E7.1 3 LKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 34 79*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.529	1	39	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-9	2	37	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.39E-8	2	39	IPR009057	Homeodomain-like
CDD	cd00167	3.50E-5	2	35	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-5	2	33	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MGLKKYGRGD WRNISRNYVT SRTPTQVASH AQKYFIRLNS GGKDKRRSSI HDITTVNIPD 60 DDHASNTNPS PSPPSALTAT SSAPEQFGAL ADSKPPPPLG GHHHFMPAHL YGSVKLEASN 120 NGYHGDSALM LMHQCGQLQP LG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951936	0.0	JF951936.1 Triticum aestivum clone TaMYB53 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154949.1	4e-94	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-31	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A3B5Y2S4	3e-99	A0A3B5Y2S4_WHEAT; Uncharacterized protein
STRING	Traes_1AL_1360F98E7.1	1e-102	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	3e-34	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]