PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_1444D461A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 140aa    MW: 15686.3 Da    PI: 10.7745
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_1444D461A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.22.9e-132342456
                           S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Traes_1AL_1444D461A.1  2 TLNPNQKAALARQLGLRPRQVEVWFQNRRARTK 34
                           678899*************************98 PP
2HD-ZIP_I/II102.63.3e-332692391
            HD-ZIP_I/II 23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                           +L+p++K++lar+Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l
  Traes_1AL_1444D461A.1  2 TLNPNQKAALARQLGLRPRQVEVWFQNRRARTKLKQTEVDCESLKRCCETLTEENRRLQREVQELR-AL 69
                           89***************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.151136IPR001356Homeobox domain
SuperFamilySSF466891.67E-11244IPR009057Homeodomain-like
PfamPF000461.1E-10234IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-12334IPR009057Homeodomain-like
CDDcd000867.43E-9337No hitNo description
PRINTSPR000312.2E-6716IPR000047Helix-turn-helix motif
PROSITE patternPS0002701134IPR017970Homeobox, conserved site
PRINTSPR000312.2E-61632IPR000047Helix-turn-helix motif
PfamPF021831.4E-113670IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.8E-223679IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
STLNPNQKAA LARQLGLRPR QVEVWFQNRR ARTKLKQTEV DCESLKRCCE TLTEENRRLQ  60
REVQELRALK LLAPPAPHLY MRAPPPTTLT MCPSCERVAP SGKPAVDESH AAMVTRAVPT  120
GPWGPVPVMP VFLGRPAQRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12836RRARTKLKQ
24247ESLKRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669660.0AK366966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169616.19e-94homeobox-leucine zipper protein HOX1-like
SwissprotQ01I231e-52HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
SwissprotQ0JB921e-52HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLA0A3B5Y1E34e-96A0A3B5Y1E3_WHEAT; Uncharacterized protein
STRINGTraes_1AL_1444D461A.15e-97(Triticum aestivum)
STRINGTraes_1AL_1444D461A1.15e-97(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.13e-45homeobox protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]