PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_169CE67D8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 100aa    MW: 10982.4 Da    PI: 9.5423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_169CE67D8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-081458445
                           S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           WT++  +l+ +a + +  +   +W+ +ar +g g+++ ++k ++ 
  Traes_1AL_169CE67D8.1 14 WTPQQNKLFEQALAVHDRDtpdRWHNVARAVGGGKSADDVKRYYE 58
                           *****************99************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.075661IPR017877Myb-like domain
SMARTSM007172.2E-71063IPR001005SANT/Myb domain
SuperFamilySSF466894.21E-111368IPR009057Homeodomain-like
CDDcd001675.38E-61461No hitNo description
PfamPF002494.7E-61458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASLSMSAAG RAGWTPQQNK LFEQALAVHD RDTPDRWHNV ARAVGGGKSA DDVKRYYELL  60
VHDIARIEAG KVAFPAYRSP CPGPGHNAGY EADRLKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-265100392RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519259e-84JF951925.1 Aegilops speltoides clone TaMYB42 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154612.11e-68protein RADIALIS-like 3
RefseqXP_020154876.11e-68protein RADIALIS-like 3
TrEMBLA0A446KD781e-68A0A446KD78_TRITD; Uncharacterized protein
TrEMBLM7YZH41e-68M7YZH4_TRIUA; DnaJ homolog subfamily C member 2
TrEMBLW5A7M81e-68W5A7M8_WHEAT; Uncharacterized protein
STRINGTraes_1AL_169CE67D8.12e-69(Triticum aestivum)
STRINGTraes_1BL_FDBBC5E8F.12e-69(Triticum aestivum)
STRINGTRIUR3_33857-P12e-69(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-30RAD-like 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]