PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_4490ED4C6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 101aa    MW: 11145.5 Da    PI: 8.4633
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_4490ED4C6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07549445
                           S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           WT+   +l+ +a + +  +   +W+ +a+ +g g+++ +++ ++ 
  Traes_1AL_4490ED4C6.2  5 WTPKQNKLFEQALAVHDRDtpdRWHNVAHAVGGGKSADDVRRYYE 49
                           *****************99************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.595156IPR017884SANT domain
SMARTSM007176.0E-7154IPR001005SANT/Myb domain
SuperFamilySSF466892.45E-11459IPR009057Homeodomain-like
CDDcd001671.02E-5552No hitNo description
PfamPF002498.3E-6549IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
GRAGWTPKQN KLFEQALAVH DRDTPDRWHN VAHAVGGGKS ADDVRRYYEL LVRDVANIEA  60
GKVPFPAYRP PCPGPNVGYE ADRFVLPLTS SLGVLAYQIN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-245841187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544122e-91AK354412.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007C15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154620.14e-49protein RADIALIS-like 3
SwissprotQ6NNN01e-27RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A446JDT14e-56A0A446JDT1_TRITD; Uncharacterized protein
TrEMBLM7ZSV84e-56M7ZSV8_TRIUA; DnaJ homolog subfamily C member 2
STRINGTraes_1AL_4490ED4C6.29e-70(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-28RAD-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]