PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AL_489411063.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WOX

Protein Properties

Length: 102aa MW: 11753.1 Da PI: 9.2764

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_489411063.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.3	2.5e-08	53	102	2	46
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkv 46 ++R+++ +eq+++Le F++ +p ++e++++ +l ++ +++V++ Traes_1AL_489411063.1 53 KPRWNPRPEQIRILEGIFNSgVVNPPRDEIRRIRLRLqeygHVADANVFY 102 89***************99***********9998888888888875 PP
2	Wus_type_Homeobox	77.8	1.4e-25	52	102	2	52
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfy 52 +++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG++ d+NVfy Traes_1AL_489411063.1 52 TKPRWNPRPEQIRILEGIFNSGVVNPPRDEIRRIRLRLQEYGHVADANVFY 102 689***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	5.8E-6	53	102	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MASSNKHWPS MFRSNPAACD FHHQPDMSNT HTRPSLISSG LDQETTRSPG ETKPRWNPRP 60 EQIRILEGIF NSGVVNPPRD EIRRIRLRLQ EYGHVADANV FY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM490242	6e-51	AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169224.1	7e-70	WUSCHEL-related homeobox 12-like
Swissprot	A3B6V0	1e-39	WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBL	A0A3B5Y669	6e-69	A0A3B5Y669_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6A1G1	7e-69	A0A3B6A1G1_WHEAT; Uncharacterized protein
TrEMBL	A0A446JBK7	6e-69	A0A446JBK7_TRITD; Uncharacterized protein
TrEMBL	A0A452ZWY6	7e-69	A0A452ZWY6_AEGTS; Uncharacterized protein
TrEMBL	N1QTU6	4e-69	N1QTU6_AEGTA; WUSCHEL-related homeobox 12
STRING	EMT01027	6e-70	(Aegilops tauschii)
STRING	Traes_1AL_489411063.1	1e-71	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-37	homeobox-3

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]