PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_4B89B33E3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 264aa    MW: 27102.4 Da    PI: 7.7804
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_4B89B33E3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.36.5e-4436134199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+
  Traes_1AL_4B89B33E3.1  36 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELNPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLR 123
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallke 99 
                            ql+++l++++ 
  Traes_1AL_4B89B33E3.1 124 QLQQDLSRARY 134
                            ******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8835136IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-4436132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MASSSASSFP GSVITMASSA AAVGAASSGA AGTGSPCAAC KFLRRKCQPD CVFAPYFPPD  60
NPQKFVHVHR VFGASNVTKL LNELNPYQRE DAVNSLAYEA DMRLRDPVYG CVGVISVLQH  120
QLRQLQQDLS RARYELSKYQ AAAAVAVSAS VGCNGAPAMA DFIGNTVPNC TQNFINISHS  180
TAIGAGLGFG HDQFAAVQML ARSYEGEGAV ARLGVNGGSG SGGYDFGYTS AMGVGPVSGL  240
GPLSGGPFLK PGTAGGDERH TAAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-55261391114LOB family transfactor Ramosa2.1
5ly0_B3e-55261391114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1349331e-129AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence.
GenBankAC1376171e-129AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence.
GenBankAP0149611e-129AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187374.11e-151LOB domain-containing protein 6-like
RefseqXP_020194956.11e-151LOB domain-containing protein 6-like
SwissprotQ32SG31e-116LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A3B5Y2070.0A0A3B5Y207_WHEAT; Uncharacterized protein
TrEMBLA0A446J3110.0A0A446J311_TRITD; Uncharacterized protein
STRINGTraes_1AL_4B89B33E3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.42e-51LBD family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]