PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_501B5BEAE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 149aa    MW: 16593 Da    PI: 9.2823
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_501B5BEAE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.85.6e-167499126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           +ktelC+ + +tG C+yGd+C+FaHg
  Traes_1AL_501B5BEAE.1 74 FKTELCNKWEETGACPYGDQCQFAHG 99
                           79***********************8 PP
2zf-CCCH18.24.5e-06112137126
                            --S---SGGGGTS..--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                            ykt  Cr  +  G  +C+yG rC+F H+
  Traes_1AL_501B5BEAE.1 112 YKTQVCR--MVIGgaICPYGHRCHFRHS 137
                            8999999..999999**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.1E-1969105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-1171105IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-973100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86373101IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-137499IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-11106138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-8107139IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-4111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.92111139IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MPKSISIRSN GYLKMDRNGK HRVTAPVNVG SQRVFVGVDG AKAEEHQGRG GEKGGQVATA  60
ADRLQFEVYS QGMFKTELCN KWEETGACPY GDQCQFAHGI AELRPIIRHP RYKTQVCRMV  120
IGGAICPYGH RCHFRHSITP ADYIPLLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-2274137467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985716e-95AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAC0988326e-95AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence.
GenBankAK1063546e-95AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
GenBankAP0149616e-95AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-95CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179184.15e-95zinc finger CCCH domain-containing protein 39-like
SwissprotQ6L5G17e-74C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3B5Y6N71e-104A0A3B5Y6N7_WHEAT; Uncharacterized protein
STRINGTraes_1AL_501B5BEAE.11e-109(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-50C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]