PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_5B5A264A8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 70aa    MW: 8047.16 Da    PI: 9.5797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_5B5A264A8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07144545
                           -HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  5 TteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           T+ E + + +a + +G      W+++a+ mg ++++ q++ ++q
  Traes_1AL_5B5A264A8.1  1 TKKENKMFEEALAYYGVSapnLWDKVASAMGGTKSAQQVRRHFQ 44
                           7889999999999999999999*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.4E-6144IPR001005SANT/Myb domain
SuperFamilySSF466894.02E-10154IPR009057Homeodomain-like
PROSITE profilePS5129410.234151IPR017930Myb domain
CDDcd001674.98E-5147No hitNo description
Gene3DG3DSA:1.10.150.603.5E-41355IPR001606ARID DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
TKKENKMFEE ALAYYGVSAP NLWDKVASAM GGTKSAQQVR RHFQILLDDV ESIEHGRIPF  60
PKYKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-173671477RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176377.13e-43protein RADIALIS-like 3
SwissprotQ6NNN01e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A3B5Z5I33e-42A0A3B5Z5I3_WHEAT; Uncharacterized protein
TrEMBLA0A446KCJ33e-42A0A446KCJ3_TRITD; Uncharacterized protein
STRINGTraes_1AL_5B5A264A8.19e-47(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-22RAD-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]