PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_5F5A87122.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 27661.3 Da    PI: 9.9036
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_5F5A87122.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.3e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien++ rqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fs +g+lyey+s
  Traes_1AL_5F5A87122.2  9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSARGRLYEYAS 59
                           79***********************************************86 PP
2K-box105.66.1e-3583173999
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                             + + +++ qqe+akL+ +i++Lq+ +R+l+Ge++++L+lkeL++Le++L+k++ +iR+kK+ell+++ie++qk e +lq+en++Lr+
  Traes_1AL_5F5A87122.2  83 IDVNSQQYFQQESAKLRHQIQSLQNANRNLMGESVGNLTLKELKSLENRLDKGIGRIRAKKHELLFAEIEYMQKLEADLQSENMYLRA 170
                            5667789********************************************************************************* PP

                  K-box  97 kle 99 
                            k++
  Traes_1AL_5F5A87122.2 171 KVA 173
                            *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.179161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-31273IPR002100Transcription factor, MADS-box
CDDcd002651.84E-43271No hitNo description
PRINTSPR004042.2E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.9E-2785172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.28388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFSA RGRLYEYASN  60
STRTTIDRYK KASASASGSA PAIDVNSQQY FQQESAKLRH QIQSLQNANR NLMGESVGNL  120
TLKELKSLEN RLDKGIGRIR AKKHELLFAE IEYMQKLEAD LQSENMYLRA KVADAERLAL  180
AAPPPSSGGA ELEVLPTFDA RTYYHHQAVS MLQDAAAASS SSRYSQSSQA AAAAATTALH  240
LGYQIKGGQL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-20173173Myocyte-specific enhancer factor 2B
1tqe_Q7e-20173173Myocyte-specific enhancer factor 2B
1tqe_R7e-20173173Myocyte-specific enhancer factor 2B
1tqe_S7e-20173173Myocyte-specific enhancer factor 2B
6c9l_A7e-20173173Myocyte-specific enhancer factor 2B
6c9l_B7e-20173173Myocyte-specific enhancer factor 2B
6c9l_C7e-20173173Myocyte-specific enhancer factor 2B
6c9l_D7e-20173173Myocyte-specific enhancer factor 2B
6c9l_E7e-20173173Myocyte-specific enhancer factor 2B
6c9l_F7e-20173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028950.0AM502895.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM27B (WM27B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149610.11e-143MADS-box transcription factor 21-like
SwissprotQ8RU311e-116MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLA0A3B5Y2450.0A0A3B5Y245_WHEAT; Uncharacterized protein
TrEMBLA0A446J3D70.0A0A446J3D7_TRITD; Uncharacterized protein
STRINGTraes_1AL_5F5A87122.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.14e-84MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]