PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_7A2072713.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 204aa    MW: 21274.4 Da    PI: 8.8049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_7A2072713.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.1e-067089221
                           EETTTTEEESSHHHHHHHHH CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                           +C+ Cgk+F+++  L  H+r
  Traes_1AL_7A2072713.1 70 PCTECGKRFPSWKALFGHMR 89
                           5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00346991IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6196996IPR007087Zinc finger, C2H2
SuperFamilySSF576677.19E-97091No hitNo description
PfamPF139121.6E-97193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-47191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576677.19E-9175202No hitNo description
SMARTSM003550.71180202IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-11180203IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577180204IPR007087Zinc finger, C2H2
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEPPPEPAAP PPPPPPPPHP HDTTLTLTLA LPPPGLASVL ISPKPGARRP RPEGGASPRP  60
RCSPIGDTPP CTECGKRFPS WKALFGHMRC HPERQWRGIT PPPAHFCQGV AAAPVAPAGQ  120
FTVQEREVAS SLLMLSSARP GASKGKKVVN AAAITRSGME SCGTSACASV VPGPANCDEH  180
NCSVCDRGFA SGQALGGHKR CHWH
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163733.11e-107zinc finger protein ZAT3-like
SwissprotO654991e-28ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A446IU291e-139A0A446IU29_TRITD; Uncharacterized protein
STRINGTraes_1AL_7A2072713.11e-142(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-29C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]