PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_7BE5906B2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 175aa    MW: 19953.4 Da    PI: 5.0027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_7BE5906B2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-172474255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr ++ +g+++AeIrdp     k +r++lg+++ a eAa+a+++a+ +l+g
  Traes_1AL_7BE5906B2.1 24 RYRGVRLRS-WGKFAAEIRDP---ArKGARVWLGTYDDAVEAARAYDRAAFRLRG 74
                           7*****998.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.4E-352488IPR001471AP2/ERF domain
PfamPF008476.4E-112474IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-222483IPR016177DNA-binding domain
CDDcd000187.45E-272483No hitNo description
PROSITE profilePS5103223.2352482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-302483IPR001471AP2/ERF domain
PRINTSPR003675.7E-132536IPR001471AP2/ERF domain
PRINTSPR003675.7E-136484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEQQPQQESC GYVEGQDEEE DFRRYRGVRL RSWGKFAAEI RDPARKGARV WLGTYDDAVE  60
AARAYDRAAF RLRGSKAILN FPNEVGTQSI QWTSPAPLAD TIAAVPTGGK RMRPAQEEER  120
LREVKKERLQ LKEEEEEGAR DADFWEELKV ICSLPPLSPL SPYPHFAFPQ LSVVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-262387468ATERF1
3gcc_A3e-262387468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612871e-147AK361287.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136O18.
GenBankAK3659921e-147AK365992.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172805.11e-98ethylene-responsive transcription factor 5-like
SwissprotQ404784e-37ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A3B5Y0H61e-124A0A3B5Y0H6_WHEAT; Uncharacterized protein
STRINGTraes_1AL_7BE5906B2.11e-125(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-19ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]