PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AL_7D8C62AA4.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

YABBY

Protein Properties

Length: 221aa MW: 23275.4 Da PI: 8.3214

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_7D8C62AA4.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	81.6	2.3e-25	41	98	4	61
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 seq+Cyv+C fC+t+l+vsvPs+slfk+vtvrCGhC+sll+v+++ ++++ Traes_1AL_7D8C62AA4.1 41 EAPSEQLCYVHCHFCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVDMRGLLFPTTTTT 98 5689******************************************998775554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-25	43	102	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSSSSSSGAS AAFTPVSQQQ QQMAPESLSS ELQPPAPMQP EAPSEQLCYV HCHFCDTVLV 60 VSVPSSSLFK TVTVRCGHCS SLLTVDMRGL LFPTTTTTVA AESAASAVTT TTSPPPAAAA 120 HHGQFHYPSS LNLAPGNPPR HSLLDEISSA NPSLQLLEQH GLGGLIAXXX XXXXXXXXCR 180 HPQSPGGKVG RSHHHGPIPS STDLRRRGSA CRRRTTASSS K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY330228	0.0	AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178920.1	8e-92	protein YABBY 3-like
Swissprot	Q8L556	7e-34	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A3B5ZT37	2e-90	A0A3B5ZT37_WHEAT; Uncharacterized protein
TrEMBL	A0A452YJ07	2e-90	A0A452YJ07_AEGTS; Uncharacterized protein
STRING	Traes_1AL_7D8C62AA4.1	1e-146	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22855	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	6e-14	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]