PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_88D49649D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 282aa    MW: 29815.8 Da    PI: 4.4564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_88D49649D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-1894144155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Traes_1AL_88D49649D.1  94 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 144
                            68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575130No hitNo description
PfamPF008477.3E-1394144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3195154IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1995153IPR016177DNA-binding domain
SMARTSM003807.6E-3695159IPR001471AP2/ERF domain
PROSITE profilePS5103223.30195153IPR001471AP2/ERF domain
CDDcd000181.54E-3096155No hitNo description
PRINTSPR003671.5E-1096107IPR001471AP2/ERF domain
PRINTSPR003671.5E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAPARELQET SSSSSSSTSS YTTSSTSMSC SSTVTDSSSC PSSPASAANA VKAAPRKRQL  60
DEGEGGQEET EEGKTTTTAT TTKKSKRSSD GKHPVYRGVR MRAWGKWVSE IREPRKKSRI  120
WLGTFPTAEM AARAHDVAAL AIKGARSAHL NFPELADVLP RAASPAPKDV QAAAALAAAF  180
TSSPPPLSTD QSESEEGLIQ EETVKNDAGA GATAPPESAA TATSCGGAAE QAEEEELRQL  240
FDLPDLLIDI EDGFGFSTMW APLPDVEEVN ADLRLEEPLL WE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1587154673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738740.0AK373874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046B05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150034.11e-105ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3B5Y0J90.0A0A3B5Y0J9_WHEAT; Uncharacterized protein
STRINGTraes_1AL_88D49649D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]