PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_93E51B797.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 88aa    MW: 9930.99 Da    PI: 5.864
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_93E51B797.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.7e-091762345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                            W++ E + + +a + +G      W+++a+ mg ++++++++ ++q
  Traes_1AL_93E51B797.1 17 EWSKKENKMFEEALAYYGEAapnLWEKVASAMGGTKSAEEVRRHFQ 62
                           7*****************99*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.981065IPR017877Myb-like domain
SMARTSM007174.2E-71467IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-111672IPR009057Homeodomain-like
PfamPF002499.9E-81762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-51771IPR009057Homeodomain-like
CDDcd001672.82E-51762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSGSSSRST SPSSDSEWSK KENKMFEEAL AYYGEAAPNL WEKVASAMGG TKSAEEVRRH  60
FQILVDDVNN IEYGRIPFPK YKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-19985277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612033e-83AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176359.11e-47protein RADIALIS-like 3
SwissprotQ6NNN08e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A3B5Y6D41e-58A0A3B5Y6D4_WHEAT; Uncharacterized protein
TrEMBLM8AJY21e-58M8AJY2_TRIUA; Uncharacterized protein
STRINGTraes_1AL_93E51B797.12e-59(Triticum aestivum)
STRINGTRIUR3_06410-P12e-59(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-23RAD-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]