PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_A3B85CAE6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 224aa    MW: 23082.2 Da    PI: 7.823
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_A3B85CAE6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.51.2e-07109146440
                    TCR   4 kgCnCkkskClkkYCeCfaagkkCsee.CkCedCkNke 40 
                             +CnC+ +kCl+  C+Cf +g  C    CkC dC+N+ 
  Traes_1AL_A3B85CAE6.1 109 VKCNCSFTKCLNCQCRCFREGLSCVMGrCKCYDCENNP 146
                            58**********************8644********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS516349.216142IPR005172CRC domain
SMARTSM011140.017143IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011140.011106148IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163413.493107192IPR005172CRC domain
PfamPF036384.5E-5110145IPR005172CRC domain
SMARTSM011140.03152193IPR033467Tesmin/TSO1-like CXC domain
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSRTTCSCPP KKCFQGTCDC LIGIELCYSG CNCGGDCQNG LSLGTINLAA AQGTTPTVAS  60
GSSAAQDTAQ TQPLAPSSST AQGIAQPHPL APSSFTAAVP KPEAVGELVK CNCSFTKCLN  120
CQCRCFREGL SCVMGRCKCY DCENNPNWLA DEDYVECACK TKNCKTRVCG CNKKLKGCNP  180
NCTCIGCENQ YGMKGADKSN AGPGGTGGTS DAGGSGSNKQ IRIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B5Y8E31e-159A0A3B5Y8E3_WHEAT; Uncharacterized protein
TrEMBLA0A446JEE11e-159A0A446JEE1_TRITD; Uncharacterized protein
STRINGTraes_1AL_A3B85CAE6.11e-160(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4176623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-07Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]