PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_C3AE6B128.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 165aa    MW: 19022.2 Da    PI: 12.658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_C3AE6B128.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.63.2e-083656122
                    AP2  1 sgykGVrwdkkrgrWvAeIrdp 22
                           + ++GVr++  +g+WvAeIr+p
  Traes_1AL_C3AE6B128.1 36 CPFRGVRQRT-WGKWVAEIREP 56
                           679****999.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.983796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-93859IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-53858IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEQEVVAGMK QKKCCPLRRS RKGCMKGKGG PDNQQCPFRG VRQRTWGKWV AEIREPNRGA  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRRRRPRCS STLQLKAVVA PMVIRRQGHR  120
AAPPTTPTPA RRPRPGLPRT WTAAPGCSRL TVTARRRRRR TSRRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154162RRRRRRTSR
2155160RRRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9520582e-61EU952058.1 Zea mays clone 1066007 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTraes_1AL_C3AE6B128.16e-81(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-21ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]