PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AL_C76BCC7EC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 255aa MW: 28316.6 Da PI: 8.3496

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_C76BCC7EC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.6	1.3e-41	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppG+rF Pt+eelv +yL++ ++g++ ++e+vi+ +d+++++Pw+Lp+ +++++ + w++F+ r+ ++a+g r++r+t sgyW Traes_1AL_C76BCC7EC.1 4 LPPGYRFYPTEEELVRFYLRHMLDGRRrGDIERVIPVADVCSLDPWQLPEvhrgACAGHGEPWFYFCARQDREARGGRPSRTTPSGYW 91 79*********************996677789**********95456544557889********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ka g+ v+s++g vg+kkt+vfy+grap g kt+W m+eyr+ Traes_1AL_C76BCC7EC.1 92 KAAGTPGLVYSAGGCPVGTKKTMVFYRGRAPAGAKTKWKMNEYRA 136 *****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-48	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	46.963	4	164	IPR003441	NAC domain
Pfam	PF02365	1.3E-22	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGELPPGYRF YPTEEELVRF YLRHMLDGRR RGDIERVIPV ADVCSLDPWQ LPEVHRGACA 60 GHGEPWFYFC ARQDREARGG RPSRTTPSGY WKAAGTPGLV YSAGGCPVGT KKTMVFYRGR 120 APAGAKTKWK MNEYRAFDDD GADADAAARL QVRSEFSLCR LYTRSGSLRQ FDRRPCTVAA 180 GGRRSEDPAS PSAAPASASE DVEVGKGQKR KRHAANDVPS SSDAYRSVQQ QQKQGGADEE 240 LVDGMTDWAE LFDWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-29	4	167	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-29	4	167	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-29	4	167	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-29	4	167	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-29	4	167	20	171	NAC domain-containing protein 19
3swm_B	5e-29	4	167	20	171	NAC domain-containing protein 19
3swm_C	5e-29	4	167	20	171	NAC domain-containing protein 19
3swm_D	5e-29	4	167	20	171	NAC domain-containing protein 19
3swp_A	5e-29	4	167	20	171	NAC domain-containing protein 19
3swp_B	5e-29	4	167	20	171	NAC domain-containing protein 19
3swp_C	5e-29	4	167	20	171	NAC domain-containing protein 19
3swp_D	5e-29	4	167	20	171	NAC domain-containing protein 19
4dul_A	5e-29	4	167	17	168	NAC domain-containing protein 19
4dul_B	5e-29	4	167	17	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359954	0.0	AK359954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1107F05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158921.1	1e-160	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-65	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A3B5Y264	0.0	A0A3B5Y264_WHEAT; Uncharacterized protein
TrEMBL	A0A446J420	0.0	A0A446J420_TRITD; Uncharacterized protein
STRING	Traes_1AL_C76BCC7EC.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-65	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]