PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_C921492AA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 658aa    MW: 73591.9 Da    PI: 6.7688
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_C921492AA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP65.31.3e-202433576
                           ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP 35 vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                           ++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  Traes_1AL_C921492AA.1  2 IDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 43
                           7899***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114119.119143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-18246IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.7E-10230IPR004333Transcription factor, SBP-box
PfamPF031101.9E-14243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MIDGVQKRYC QQCGKFHILL DFDEDKRSCR RKLERHNKRR RRKPDSKGTL EKEIDEQLDL  60
SADGSGSGEI REENIDGASC DMLETVLSNK VLDRETPMGS EDALSSPTCT QLSLQNDRSK  120
SIVTFAASAE ACLGAKQENA KLTNSPVHDS KSAYSSSCPT GRISFKLYDW NPAEFPRRLR  180
NQIFEWLSSM PVELEGYIRP GCTILTVFIA MPQHMWDKLS EDTANLVRNL VNAPSSLLLG  240
KGAFFVHANN TIFQVLKDGA TLMSTRLEVQ APRIHCVHPT WFEAGKPIEL LLCGSSLDQP  300
KFRSLLSFDG EYLKHDCCRL TSRETFGCVK NGASTFDSHH EVFRINITQT KPDTHGPGFV  360
EVENVFGLSN FVPILFCSKQ LCFELERIQD ALCGSSKYKS ANGEFPGITS DPCEHWKLQQ  420
TAMSGFLIEI GWLIKKPSPD EFKKLLSKTN VERWICVLEF LIQNNFTNVL EMIVKSSDNI  480
IGSEILSNLE SGRLEHHVTA FVGYIRHARI IVDQRAKHNE ETQLQTRWCG DSVSDQPSLG  540
TSVPLGKENV TASDDFCLPS TNAECEEEVS VPLVTNEAVS HRQCRAPEMN ARWLNPALVA  600
PFPSGMMRTR LVATVAVAAI LCFTACVAVF HPHRVGVLGA PVKRYLFSDC PPWHHSGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-191483885squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12543KRSCRRKLERHNKRRRRKP
22941RRKLERHNKRRRR
33643NKRRRRKP
43742KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2503120.0AK250312.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf72c21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161545.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A446J2K70.0A0A446J2K7_TRITD; Uncharacterized protein
STRINGTraes_1AL_C921492AA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-112squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]