PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_DD7FB8E96.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 718aa    MW: 82308.5 Da    PI: 6.2875
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_DD7FB8E96.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.67.3e-12110191291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                            +Y+++A   GF   +  +  +      +k +  C+++ k +++++  +++r+  ++++ +C+a+ +vk   +g+we t++++eHnH+l
  Traes_1AL_DD7FB8E96.1 110 YYSAHALLSGFVAIRGPNFMR------KKFHVECNRSRKLAPSQDL-KRKREVYSVNKAQCEARAVVKPV-KGQWEFTSVRSEHNHPL 189
                            8999*******9999988777......456799*********9988.99999****************99.9**************** PP

                   FAR1  90 ap 91 
                            +p
  Traes_1AL_DD7FB8E96.1 190 CP 191
                            97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-10110191IPR004330FAR1 DNA binding domain
PfamPF105515.1E-28312405IPR018289MULE transposase domain
PROSITE profilePS509669.025595631IPR007527Zinc finger, SWIM-type
PfamPF044347.8E-4602623IPR007527Zinc finger, SWIM-type
SMARTSM005750.0074606633IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MFFFICIQEQ PVIGADWSSG ALSDELEIHA NSADLSLQLA EEQSQLHDIL AISEMPINDT  60
GSGSDSDGSS GNETDKEPGK YYYPGFEELV NPRPPEVGMR FPTLEDATRY YSAHALLSGF  120
VAIRGPNFMR KKFHVECNRS RKLAPSQDLK RKREVYSVNK AQCEARAVVK PVKGQWEFTS  180
VRSEHNHPLC PSPSLTKFFL SCKHMSAEEK SFLRALQQSS IHPKKAMKIF KRMRGILGSL  240
PFNTKDANTS QCAEQQGKPN SDVETTVKHL KELELQNPCV SITMQTDEDS IVRSLFWTDA  300
RSRLDYEIFG DVLSFDTTYS TISHNMLFTS ISGMNEHGRT LVFGYALLQD RKAETFKWMF  360
ETFLHVMGGK MPRAIITDQD EAIAKAISEV MPQVKLRFCK FHVMRKAREK LGGFIAARGD  420
INSELHALVN NSLTETEFEE GWAALIERYS ASGNEYLQLL WETRKEWVPV YFKEDFYPFV  480
EMTGCCEGSN LLFRDYVLPK DRIEKFLERY EDVQERIMET DDEDRLQSRT EPSCFSMQPI  540
EKHAARIYTR QIFLKVQREL LHSTAFNVQE IQTGTVYRLE KVSAYENPEF DRNSFELLVE  600
PSTNAIKCEC AKFTRDGIPC CHIFRLFTQF GVNEIPGQYI VPRWTAKFKE EQMKQYREKC  660
LDSRGTDQSE NTMRYAMLLS KVADIGKEIC GDGSKCDKFR LELEAIQGKT GNGGMRNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-39HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165335.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452ZIH50.0A0A452ZIH5_AEGTS; Uncharacterized protein
STRINGTraes_1AL_DD7FB8E96.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-79FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]