PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_E33C6D5CE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 288aa    MW: 32348.8 Da    PI: 9.9767
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_E33C6D5CE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-166295134
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                           C++CgttkTp+W+rg  g +tLCnaCG++y++++
  Traes_1AL_E33C6D5CE.1 62 CRHCGTTKTPQWHRGAAGCRTLCNACGVRYKRER 95
                           *******************************975 PP
2GATA59.73.7e-19214247134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C++Cgt +Tp+WR+gp+g ktLCnaCG++yr  +
  Traes_1AL_E33C6D5CE.1 214 CRHCGTAETPQWREGPEGRKTLCNACGVRYRAGR 247
                            *******************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.3475692IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-956104IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-125793No hitNo description
Gene3DG3DSA:3.30.50.104.0E-136094IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.03E-126192No hitNo description
PROSITE patternPS0034406287IPR000679Zinc finger, GATA-type
PfamPF003209.7E-146295IPR000679Zinc finger, GATA-type
SMARTSM004016.6E-16208262IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-14211269No hitNo description
Gene3DG3DSA:3.30.50.105.6E-15212245IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440214239IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.662214244IPR000679Zinc finger, GATA-type
PfamPF003204.7E-17214248IPR000679Zinc finger, GATA-type
CDDcd002021.20E-13214262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDLELAVMGA RRAQEELESL PNKDAFPTVE EMEQEPAVMG SRRKVVRRRR GAMSARPGQR  60
RCRHCGTTKT PQWHRGAAGC RTLCNACGVR YKRERPEYAP SHQEGLEVGG GEALETMEAE  120
PSEVGSQTKR VVRQRRTLAW PPTAAEPEQR WCQHCGKMKK PRWREGAAAE QEREWLLNKN  180
VPAVETVEPK PSVVAPRTEG VVSPALSDLG QRLCRHCGTA ETPQWREGPE GRKTLCNACG  240
VRYRAGRLVP EYRPLRSPTF SPELHSNRHS RVAHMRPAGA PHPLPPDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685360.13e-36GATA transcription factor 5-like
TrEMBLA0A3B5XYV70.0A0A3B5XYV7_WHEAT; Uncharacterized protein
TrEMBLA0A446IT540.0A0A446IT54_TRITD; Uncharacterized protein
STRINGTraes_1AL_E33C6D5CE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-28GATA transcription factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]