PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_ED83D13D4.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 481aa    MW: 51468.2 Da    PI: 11.9009
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_ED83D13D4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix1101.5e-34159244187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r++++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  Traes_1AL_ED83D13D4.2 159 RWPKAEVHALIQLRSNLDMRYQEAGPKGPLWEEISAGMRRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 244
                            8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.41152216IPR017877Myb-like domain
SMARTSM007170.0032156218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-4158215IPR009057Homeodomain-like
PfamPF138376.7E-24158245No hitNo description
CDDcd122035.82E-32159223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MARLAREQEI LGQERAMAAT RDAAVLSFIQ KITGQTIPMP SIAAQAITFM PPPPPSQPHA  60
TPIAYSAAPV HPRPPSSQPP ATHSPPQPQP SPRQQKPPTM PPVTPQPHKS PAPATPQLQQ  120
QAPAVNSSCM DIVVAPSEAP HDSSGYDGSG GGSGPTSSRW PKAEVHALIQ LRSNLDMRYQ  180
EAGPKGPLWE EISAGMRRMG YNRSSKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYFH  240
QLEALYRNKA ALGSPSGAGG ALALPPPAVH ANAAPQERIE AFTVAAPISQ TAPQQPPVAK  300
NDASNAGNGN GNGGGASAGV SGGAQRLAAS NGGSRFVFGE AGGDAAAKKV IKLENMCILD  360
VAIAICRGSH SRSRRRRSRL RSTATTVRAA AAPRATTWTR TTRTRTTTRT RTRRTTSTAT  420
KRSTRSSSRG SNNIRISINS TTTTLSGRTP PRPAAATRLA LPLPARRRRQ RRQPDLSWAW  480
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366376RGSHSRSRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544260.0AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05.
GenBankAK3615070.0AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04.
GenBankAK3727130.0AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191229.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_020191230.10.0trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A446IWB00.0A0A446IWB0_TRITD; Uncharacterized protein
STRINGTraes_1AL_ED83D13D4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-51Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]