PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_F16BCEC90.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 247aa    MW: 28204.8 Da    PI: 7.4824
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_F16BCEC90.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.53.1e-143673339
                    TCR  3 kkgCnCkkskClkkYCeCfaa.gkkCseeCkCedCkNk 39
                           ++gCnCkks+ClkkYC+C+++ g+ Cs  C+CedCkN 
  Traes_1AL_F16BCEC90.2 36 RRGCNCKKSSCLKKYCDCYQQdGTGCSLFCRCEDCKNP 73
                           589****************853899************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163415.873175IPR005172CRC domain
SMARTSM011145.1E-133476IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.1E-103772IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLHFLSSLWL ITIISILCLC HLQEDAHNSS SSTPPRRGCN CKKSSCLKKY CDCYQQDGTG  60
CSLFCRCEDC KNPYGKNEGF MADESKRFIY TGADLDHSED EHDFVVERSP RLQSPISKES  120
SFQHTPPRSK ASSRDTHLLP QVLSQWQPRS WQLSLKRQGN DHRAVDDSGE NHKSSSHEWQ  180
LAKHQVQEDA YSISRCVQIL NGMVELSQVE KSVAPDVFLQ PGNREIFVSL GLDVRALWLK  240
RKIQHLT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678660.0AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24.
GenBankAK3745570.0AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157750.11e-161protein tesmin/TSO1-like CXC 3
TrEMBLA0A446J7K81e-180A0A446J7K8_TRITD; Uncharacterized protein
STRINGTraes_1AL_F16BCEC90.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.15e-18Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]